Locus 4171

Sequence ID 3L_DroMel_CAF1
Location 12,181,343 – 12,181,445
Length 102
Max. P 0.500000
window6470

overview

Window 0

Location 12,181,343 – 12,181,445
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 83.66
Mean single sequence MFE -26.88
Consensus MFE -19.03
Energy contribution -19.48
Covariance contribution 0.45
Combinations/Pair 1.21
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12181343 102 - 23771897
AAAAACGGAGAACAUGUAUAGCAAUGUGUUGCCAGUGGACAAUGAUACGGAUCCGGCCGAUUCCACGCUGCAUGUAUACUCCAAUAUCAUCGAUGAACGCAA
......((((.(((((((..((((....))))..(((((.....((.(((......))))))))))..)))))))...)))).................... ( -23.60)
>DroSec_CAF1 15236 102 - 1
AAAAACGGAGAACAUGUACAGCAAUGUGCUGCCAGUGGACAAUGAUACGGAUCCGGCUGAUUCCACUCUGCAUGUGUACUCCAACAUCAUCGAUGAACGCAA
......((((.(((((((((....)))))(((.((((((....(...((....)).)....))))))..))).)))).))))..((((...))))....... ( -29.40)
>DroSim_CAF1 14979 102 - 1
AAAAACGGAGAACAUGUACAGCAAUGUGCUGCCAGUGGACAAUGAUACGGAUCCAGCGGAUUCCACGCUGCAUGUGUACUCCAAUAUCAUCGAUGAACGCAA
......((((.((((((.(((((((.(((((((.(((........)))))...))))).)))....)))).)))))).)))).................... ( -26.50)
>DroEre_CAF1 17246 102 - 1
AAAAACGGAGAACAUGUACAGCAACGUGCUGCCAGUGGACAAUGAUACGGAUGCAGCCGAUUCCACCUUGCAUGUGUACUCCAACAUCAUUGAUGAACGCAA
......((((.(((((((((((.....))))...(((((.....((.(((......))))))))))..)))))))...))))..((((...))))....... ( -27.60)
>DroYak_CAF1 17733 102 - 1
CAAAACGGAGAACAUGUACAGCAACGUGCUGCCAGUGGACAAUGAUACGGAUGCAGCCGAUUCCACACUGCAUGUGUACUCCAACAUCAUUGAUGAACGCAA
......((((.(((((((((((.....))))...(((((.....((.(((......))))))))))..)))))))...))))..((((...))))....... ( -28.40)
>DroAna_CAF1 23601 87 - 1
GAAAACGGAGAGCAUGUACAUCAAUGUGCCGGCU---------------CCCCCGGCAGAUGCCAAUCUCCAUGUCUACUCCAACGUCAUUGACGAACGACA
......((((((((((.......((.((((((..---------------...)))))).)).........)))).)).))))..((((...))))....... ( -25.79)
>consensus
AAAAACGGAGAACAUGUACAGCAAUGUGCUGCCAGUGGACAAUGAUACGGAUCCAGCCGAUUCCACGCUGCAUGUGUACUCCAACAUCAUCGAUGAACGCAA
......((((.(((((((((((.....))))...(((((......................)))))..)))))))...))))..((((...))))....... (-19.03 = -19.48 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006