Locus 4170

Sequence ID 3L_DroMel_CAF1
Location 12,180,763 – 12,180,861
Length 98
Max. P 0.977040
window6469

overview

Window 9

Location 12,180,763 – 12,180,861
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.25
Mean single sequence MFE -17.69
Consensus MFE -15.88
Energy contribution -16.12
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 1.78
SVM RNA-class probability 0.977040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12180763 98 - 23771897
ACCUUAAAGCGUUACGCAUUUGAAACAGAAAGAGAAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGAUAUAUGUAUGCAUA
...((((((((...))).))))).......(((........)))(((((((((((((..((.(((............)))))..))))))))))))). ( -18.20)
>DroSec_CAF1 14650 98 - 1
ACCUUAAAGCGUUACGCAUUUGAAACAGAAAGAGAAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGAUCCAUGUAUGCAUA
...((((((((...))).))))).......(((........)))(((((((((((((((((.............)))))))(....))))))))))). ( -18.42)
>DroSim_CAF1 14391 98 - 1
ACCUUAAAGCGUUACGCAUUUGAAACAGAAAGAGAAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGAUCUAUGUAUGCAUA
...((((((((...))).))))).......(((........)))(((((((((((((((((.............)))))))......)))))))))). ( -16.62)
>DroEre_CAF1 16676 92 - 1
ACCUUAAAGCGUUACGCAUUCGAAACAG------AAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGAUAUAUGUAUGCAUA
........(((...))).(((......)------)).......((((((((((((((..((.(((............)))))..)))))))))))))) ( -18.00)
>DroYak_CAF1 17161 92 - 1
ACCUUAAAGCGUUACGCAUUCGAAACAG------AAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGUUAUAUGUAUGCAUA
........(((...))).(((......)------)).......(((((((((((((((.((.(((............))))).))))))))))))))) ( -17.20)
>consensus
ACCUUAAAGCGUUACGCAUUUGAAACAGAAAGAGAAAUAUAUCUAUGCAUAUAUGUAGAUGAUAAUAACUAAAGCAUUUACGGAUAUAUGUAUGCAUA
........(((...)))..........................((((((((((((((..((.(((............)))))..)))))))))))))) (-15.88 = -16.12 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:58 2006