Locus 417

Sequence ID 3L_DroMel_CAF1
Location 1,219,712 – 1,219,803
Length 91
Max. P 0.549293
window612

overview

Window 2

Location 1,219,712 – 1,219,803
Length 91
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -21.88
Consensus MFE -12.89
Energy contribution -13.70
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -1.87
Structure conservation index 0.59
SVM decision value 0.03
SVM RNA-class probability 0.549293
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1219712 91 + 23771897
CAGCAACCCAAAUAAAUAAAUAUUUGGACAAA-UAAACAUAUGUGCCGUGGAGCUUUGUCU--GGUUUACCUUUUGGCUUCUCGGUAAUUGCUC
.(((((.(((((((......))))))).....-..........(((((.((((((......--((....))....)))))).))))).))))). ( -27.20)
>DroEre_CAF1 6137 91 + 1
CAGCAACCCAAAUAUAUAAAUAUUUGGACAAUGCACACAUGUGUGCCACAGAGCU-UGUCU--AGUUUACCUGUUGGCUGCCCAGUAAUUGCUC
.(((((.((((((((....))))))))((...((((....))))(((((((((((-.....--))))...))).))))......))..))))). ( -23.90)
>DroYak_CAF1 6136 91 + 1
CAGCAACCCAAAUAAAUAAAUAUUUGGACAAA-UAAACAUGUGUGCCACAGAGCUUUGUCU--AGUUUACCUGUUGGCUUUCGGGUAAUUGCUC
.(((((.................(((((((((-......((((...))))....)))))))--)).(((((((........)))))))))))). ( -20.90)
>DroAna_CAF1 6574 87 + 1
CAGCAACCCAAAUAAAUAAAUAUUUGGACAAA-UAAACAUGUGUGUGGCAGACCUGUGUUUUCGGUUUACCUGUAAUCUUUGG------AGCUC
.(((...(((((((......))))))).((((-...(((....)))((.(((((.........))))).)).......)))).------.))). ( -15.50)
>consensus
CAGCAACCCAAAUAAAUAAAUAUUUGGACAAA_UAAACAUGUGUGCCACAGAGCUUUGUCU__AGUUUACCUGUUGGCUUCCCGGUAAUUGCUC
.(((((.(((((((......))))))).................(((((((((((........))))...)))).)))..........))))). (-12.89 = -13.70 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:22 2006