Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,174,510 – 12,174,615 |
Length | 105 |
Max. P | 0.585588 |
Location | 12,174,510 – 12,174,615 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -29.43 |
Consensus MFE | -17.82 |
Energy contribution | -18.73 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.18 |
Mean z-score | -1.80 |
Structure conservation index | 0.61 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12174510 105 + 23771897 CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAACGAAAGAGUUGCUAAUUA ..........(((((((((((((((((.((((((((.((......)).)))))))).)))..((...))))))).))))).......(....)...))))..... ( -34.00) >DroPse_CAF1 9448 102 + 1 CUUCUUCUUGAGCACACAAUCGAUGGCCUGAACAACCUCCUGGAAGAUGUCAUCGACAUCACGCUCGGCAUUGAUCUGUGGAUAG-GCGAA--AGUUAUUCAAUA .......(((((..(((((((((((.((.((.(..((....))..((((((...))))))..).))))))))))).))))....(-((...--.))).))))).. ( -27.60) >DroSec_CAF1 7779 105 + 1 CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAACGAAAGAGUUGCUAAUUA ..........(((((((((((((((((.((((((((.((......)).)))))))).)))..((...))))))).))))).......(....)...))))..... ( -34.00) >DroEre_CAF1 8758 104 + 1 CUUUUUCUUCAGCACACAGUCAAUGGCCUGGACGACUUCCAGAAAGAUAUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAUUAAAAUUGAACAG-UGCUAAUUA ..........(((((((((((((((((.(((((((..((......))..))))))).)))..((...))))))).))))..(((....)))...)-))))..... ( -28.60) >DroAna_CAF1 16421 100 + 1 CUUCUUCUUCAGCACGCAGUCGAUGGCCUGGCAGACCUCCAAGAAGAUGUCGUCCACGUCGCGCUCGGCGUUGAUCUGUUCAU----GGGAAUACUUGAGAAUA- .(((((..(((((.((.((.((.((((.(((..(((.((......)).)))..))).))))))))))..)))))..(((((..----..)))))...)))))..- ( -24.80) >DroPer_CAF1 15893 102 + 1 CUUCUUCUUGAGCACACAAUCGAUGGCCUGAACAACCUCCUGGAAGAUGUCAUCGACAUCACGCUCGGCAUUGAUCUGUGGAUAG-GCGAA--AGUUAUUCAAUA .......(((((..(((((((((((.((.((.(..((....))..((((((...))))))..).))))))))))).))))....(-((...--.))).))))).. ( -27.60) >consensus CUUCUUCUUCAGCACACAGUCAAUGGCCUGGACGACCUCCAGAAAGAUGUCGUCCACGUCACGCUCGGCAUUGAUCUGUGAAUAA_ACGAAA_AGUUGCUAAUUA ..............(((((((((((.((((((.....)))))...(((((.....)))))......).)))))).)))))......................... (-17.82 = -18.73 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:57 2006