Locus 4168

Sequence ID 3L_DroMel_CAF1
Location 12,168,614 – 12,168,725
Length 111
Max. P 0.618964
window6467

overview

Window 7

Location 12,168,614 – 12,168,725
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 92.18
Mean single sequence MFE -22.69
Consensus MFE -18.86
Energy contribution -19.30
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -1.56
Structure conservation index 0.83
SVM decision value 0.17
SVM RNA-class probability 0.618964
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12168614 111 - 23771897
ACGGCCGAGAACAACAGGCUGAAAAAUGUGUAUCAACAACACACAUUAGAAUUUGUAUUAGGCUAAUACAUGACUUCUGUAUUAAUCUUAAUAUUUAAUAGGGGAAGAGUA
.(((((..........)))))...(((((((.........))))))).......((((((((.(((((((.(....))))))))..))))))))................. ( -21.70)
>DroSim_CAF1 2147 111 - 1
ACGGCCGAGAACAACAGGCUGAAAAAUGUGUAUCAACAACACACAUUAGAAUUUGUAUUAGGAUGAUACGUGACUUCUGUAUUAAUCUUAAUAUUUAAUAGGAGAAGAGUA
.(((((..........)))))...(((((((.........))))))).......((((((((((((((((.(....))))))).))))))))))................. ( -23.80)
>DroEre_CAF1 2830 110 - 1
ACGGCCGAGAACAACAGCCUGAAAAAUGUGUAUCAUCAGCACUCAUUAGAAUUUGUAUUAGGUUAAUACGUGACUUCUGUAUUAAUCUUAAUAUUUAAAAGGA-GAGUGAA
..(((.(.......).)))....................(((((.((.......((((((((((((((((.(....))))))))))).)))))).......))-))))).. ( -21.34)
>DroYak_CAF1 4280 110 - 1
ACGGCCGAGAACAACAGGCUGAAAAAUGUGUAUCAACAACACACAUUAGAAUUCGUAUUAAGUUAAUACGUGACUUCUGUAUUAAUCUUAAUAUUUAAUAGGA-AAGUCUA
.(((((..........)))))...(((((((.........)))))))......(((((((...))))))).(((((.(.((((((.........)))))).).-))))).. ( -23.90)
>consensus
ACGGCCGAGAACAACAGGCUGAAAAAUGUGUAUCAACAACACACAUUAGAAUUUGUAUUAGGUUAAUACGUGACUUCUGUAUUAAUCUUAAUAUUUAAUAGGA_AAGAGUA
.(((((..........)))))...(((((((.........))))))).......((((((((((((((((.(....))))))))).))))))))................. (-18.86 = -19.30 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006