Locus 4167

Sequence ID 3L_DroMel_CAF1
Location 12,167,806 – 12,167,904
Length 98
Max. P 0.826650
window6466

overview

Window 6

Location 12,167,806 – 12,167,904
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 76.15
Mean single sequence MFE -18.73
Consensus MFE -11.28
Energy contribution -13.23
Covariance contribution 1.95
Combinations/Pair 1.28
Mean z-score -1.67
Structure conservation index 0.60
SVM decision value 0.70
SVM RNA-class probability 0.826650
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12167806 98 + 23771897
CAAUUGAAAACCAAUUGUAAUUGCAAUUGCAUGAGCAAAAUCGUUCGCCGGAGAUUGCAAUUCGAUUUCCUCAUAAAAAAUUUCAUUCUCCAU--GUGUC
....(((((..(((((((....)))))))...((((......))))...((((((((.....))))))))..........)))))........--..... ( -18.50)
>DroSec_CAF1 1364 97 + 1
CAAUUGAAUACCACUUGUAAUUGCAAUUACCUGAGCAAAAUCGUUCGCCGGUGAUUGCAAU-UGAUUUCCUCGUAAAAAUUAUCACUCUCCGU--GUGUC
.((((...(((......(((((((((((((((((((......)))))..))))))))))))-))........)))..))))..(((.......--))).. ( -22.94)
>DroSim_CAF1 1365 98 + 1
CAGUUGAAUACCAAUUGUAAUUGCAAUUACCUGAACAAAAUCGUUCGCCGGUGAUUGCAAUUUGAUUUCCUCGUAAAAAAUAUCACUCUCCGC--UUGUC
((((((.....)))))).((((((((((((((((((......)))))..)))))))))))))...............................--..... ( -23.40)
>DroEre_CAF1 2044 91 + 1
CA-------ACCAAUUGUAAAUUUACUUAUCUGAGCAAAAUCGUUCGCCGGUGAUUGCAAUUUGAUUUCCUUAUUAAAAAUAUUAUUCUCCAU--GUGUC
..-------.(.((((((((..(((((....(((((......)))))..))))))))))))).).............................--..... ( -11.30)
>DroYak_CAF1 1370 90 + 1
CA-------ACCAAUUGUAAUUGCAAUUACCCGAACAAAAUCGUUCGCCGGUGAUUGCAGUUUGAUUUCCGUAUGAAAAAUAUCAUUC-CCGU--AUGUC
..-------...(((((.((((((((((((((((((......)))))..))))))))))))))))))..((((((.............-.)))--))).. ( -24.34)
>DroAna_CAF1 8729 83 + 1
CA-------AUCAAUUGUAAUUUCAAUUAUCCGAGCAAAAUCGGUCG----------CAAUUUGCAUUCCAUGUAAAUAAUUACUUUUUCGAUUCGUGUG
.(-------(((((..((((((........((((......))))...----------..((((((((...))))))))))))))...)).))))...... ( -11.90)
>consensus
CA_______ACCAAUUGUAAUUGCAAUUACCUGAGCAAAAUCGUUCGCCGGUGAUUGCAAUUUGAUUUCCUCAUAAAAAAUAUCAUUCUCCAU__GUGUC
..................((((((((((((((((((......)))))..)))))))))))))...................................... (-11.28 = -13.23 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006