Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,164,711 – 12,164,819 |
Length | 108 |
Max. P | 0.557912 |
Location | 12,164,711 – 12,164,819 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.59 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -11.12 |
Energy contribution | -12.07 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.35 |
Mean z-score | -2.17 |
Structure conservation index | 0.33 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12164711 108 + 23771897 CUGACUUUGCUGUGGAUAGCAGCUUUAGAAUCUGAA------------GCUGAUCCCUUGAUUGUUGAGAUAACAAAUGGAAAAAUCCGUGGCAAAGAUAAUGGGUUGUACUACAGCUAC ....((((((..(((((..(((((((((...)))))------------)))).(((.(((.((((....)))))))..)))...)))))..))))))......(((((.....))))).. ( -35.90) >DroPse_CAF1 43491 106 + 1 UUGU-----UUUUGGAUUAGUUCGUCCGCGUCUGAU---------CCAGCUGAUCCGCUGCUAGUGGAUCUCCCCAAUGGCAAGCUACGCGGACGCGAUAACGGCAACUAUUAUAGCUAC ....-----...((((((((..((....)).)))))---------)))((((....(((((((.(((......))).)))).)))..(((....)))....))))............... ( -32.80) >DroSec_CAF1 41792 108 + 1 CUGACUUUGCUGUGGAUCGCAGCCGCAGAAUCUGAA------------GCAGAUCCUCUGAUUGUUGAGAUUACAAAUGGAAAAAUCCGUGGCAAAGAUAAUGGGCUGUACUACAGCUAC ........(((((((...((((((.((..((((...------------((.((((.((........))))))....(((((....))))).))..))))..)))))))).)))))))... ( -34.50) >DroSim_CAF1 42322 108 + 1 CUGACUUUGCUGUGGAUAGCAGCCGCAGAAUCUGAA------------GCAGAUCCUCUGAUUGUUGAGAUUACAAAUGGAAAAAUCCGUGGCAAAGAUAAUGGGUUAUACUAUAGCUAC ....((((((..(((((.....((((((((((((..------------.)))))..)))).((((.......)))).)))....)))))..))))))......((((((...)))))).. ( -29.00) >DroEre_CAF1 38442 120 + 1 UUGACUUUGCUUUGGAUAGCAGCCUCAGGAUCUGAAGUUGUCCUACAAGCGGAUCCAUUGGUUGUUGAGAUCCCAAAUGGAAAAAUUCAGGGCAGAGAUAAUGGCCAGUACUACAGCUAC ....((((((((((((((((((((...(((((((...(((.....))).)))))))...)))))))....(((.....)))...)))))))))))))....((((..........)))). ( -39.40) >DroYak_CAF1 41653 105 + 1 UUGACUUUGCUGUGGAUAGCAGCCUCAGGAGCUGAA---------------GAUCCAUUGGUUGUUGAGAUCCCCAAUGGAAAACUUCGUGGCAAAGAUAAUGGCCAGUACUACAGCUAC ........(((((((((..(((((....).))))..---------------.))))((((((..(((......(((.((((....)))))))......)))..))))))...)))))... ( -31.30) >consensus CUGACUUUGCUGUGGAUAGCAGCCUCAGAAUCUGAA____________GCAGAUCCACUGAUUGUUGAGAUCACAAAUGGAAAAAUCCGUGGCAAAGAUAAUGGCCAGUACUACAGCUAC ....((((((..(((((.....((...........................((((....)))).(((......)))..))....)))))..))))))....................... (-11.12 = -12.07 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:54 2006