| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,164,395 – 12,164,505 |
| Length | 110 |
| Max. P | 0.693793 |
| Location | 12,164,395 – 12,164,505 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -12.80 |
| Energy contribution | -14.30 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.693793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12164395 110 + 23771897 UGCGAUUUCAAAGAUAAUGUAGGUAGUGAGAAAUUCCAAUUAUUAGCUAUUUAUAUUGAUGGCUGCCAGAAUAGGCAGCAUGUGGAAUUUCCGUAAGUUACAUGAAUAAA ................((((((.(..((.(((((((((((((.((........)).)))).((((((......))))))...)))))))))))..).))))))....... ( -29.30) >DroSec_CAF1 41471 110 + 1 UGCGCUUUCAAAGAUAAUGUAGGUAGUGAGAAAUUCCAAUUAUUAGCUAUUUAUAUUGAUGGAUGCCAGAAUAGGCAGCAUGUGGAAUUUCCAUAAGUUACAUGAAUAAA ................((((((.(.(((.(((((((((........(((((......))))).((((......)))).....)))))))))))).).))))))....... ( -27.10) >DroSim_CAF1 42015 110 + 1 UGCGCGUUCAAAAAUAACGUAGGUAGUGAGAAAUUCCAAUUAUUAGCUAUUUAUAUUGAUGGAUGCCAGAAUAGGCAGCAUGUGGAAUUUCCAUGAGUUACACGAAUAAA ..................((((.(.(((.(((((((((........(((((......))))).((((......)))).....)))))))))))).).))))......... ( -25.40) >DroEre_CAF1 38115 110 + 1 UGCGUUUUCAAAGAUAAUGUAGGCAGUGAGAAAUUCGAGUUGUUAUCUAUUAGUAAGAAUGGUUGCGAGAAUAAGCAAUAUGUUGAAUUUCCGUAAGUUACUUUAAUAAA ((((((.((...)).))))))...(((((((((((((((((.((((......)))).))).(((((........)))))...)))))))))(....))))))........ ( -19.40) >DroWil_CAF1 46558 96 + 1 UGCCACUUCCAAAACAAUGUGGGAAGUGAUAAAUUCCAAUUGCUAUCAAUUAAUCGUAAUGGUUGCUUAAACGAACAAUACGAUGAAUUUCCCUAA-------------- ...(((((((...((...)).)))))))..((((((.(((((....))))).((((((.((.(((......))).)).))))))))))))......-------------- ( -19.90) >DroYak_CAF1 41322 110 + 1 UGCGUUUUCAAAGAUAAUGUAGGCAGUGAGAAAUUCGAGUUACUAUCCAUUCAUAAGGAUGGAUGCGAGAAUAAGCAGUAUGUAGAAUUUCCGUAGGUUACUCGAAUAAA ((((((.((...)).))))))...........((((((((.(((.(((((((....)))))))((((..(((..((.....))...)))..))))))).))))))))... ( -27.60) >consensus UGCGAUUUCAAAGAUAAUGUAGGUAGUGAGAAAUUCCAAUUAUUAGCUAUUUAUAUUGAUGGAUGCCAGAAUAAGCAGCAUGUGGAAUUUCCGUAAGUUACAUGAAUAAA ..................((((.(.(((.(((((((((........(((((......))))).((((......)))).....)))))))))))).).))))......... (-12.80 = -14.30 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:53 2006