Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,159,389 – 12,159,480 |
Length | 91 |
Max. P | 0.665073 |
Location | 12,159,389 – 12,159,480 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.58 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -14.38 |
Energy contribution | -13.99 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.23 |
Mean z-score | -1.62 |
Structure conservation index | 0.57 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12159389 91 - 23771897 AGUGCAAGGCCACGGCAUUGAGUUACGAGUC---U----GAUUGUAAAGGUCGUUGCACGAGGACCCAUGAA---------AUGUAUUGUGGCAAAUGAUAAGAAUA ........(((((.(((((...((((((...---.----..)))))).((((.((....)).)))).....)---------))))...))))).............. ( -23.00) >DroPse_CAF1 37958 100 - 1 AGUGCAUGGCCACUGCAUUGAAUAACGUGAU---UGAGCGAUUGUUAAGGUCGGUGCGCAAGAGAUCAUUC----CUCGUGUAGAAAUGUAUUAUAUGAGCAGUGUA .((((((((((.(......)((((((((...---...))).)))))..)))).)))))).......((((.----(((((((((.......))))))))).)))).. ( -25.80) >DroSec_CAF1 36589 91 - 1 AGUACAAGGCCACGGCAUUGAGUUAUGAGUC---U----GAUUGUAAAGGUCGUUGCACGAGGACCCAUGAA---------AUGCAGUGUGGGAAAUGAUGAGAAUA .........((((.(((((...(((((.(((---(----...(((((......)))))...)))).))))))---------))))...))))............... ( -21.80) >DroSim_CAF1 36987 91 - 1 AGUGCAAGGCCACGGCAUUGAGUUACGAGUC---U----GAUUGUAAAGGUCGUUGCACGAGGACCCAUGAA---------AUGCAGUGUGGGAAAUGAUAAGAAUA .((((((((((...(((.(.((........)---)----.).)))...)))).)))))).....((((((..---------......)))))).............. ( -24.50) >DroEre_CAF1 33690 100 - 1 AGUGCAAGGCCACGGCAUUGAGUUACGAGAC---U----GAUUGUAAAGGUCGUUGCACGAGGACUCAUGAAUGUAUUGCUUUAAAAUGUUGGAAACGAUAAGAGUA .((((((((((...(((.(.((((....)))---)----.).)))...)))).))))))....((((.((((.(.....)))))...(((((....))))).)))). ( -29.70) >DroYak_CAF1 36915 103 - 1 AGUGCAAGGCCACGGCAUUGAGUUACGAGUUACGA----GAUUGCAAAGGUCGUUGCACGAGGACUCUUGAAUGUAUUGCUAUAAAAUGUGGCAAAUGAUAAGAAUA .((((((((((...(((((..((........))..----)).)))...)))).))))))......(((((......(((((((.....)))))))....)))))... ( -26.50) >consensus AGUGCAAGGCCACGGCAUUGAGUUACGAGUC___U____GAUUGUAAAGGUCGUUGCACGAGGACCCAUGAA_________AUGAAAUGUGGGAAAUGAUAAGAAUA .((((((((((...(((.........................)))...)))).))))))................................................ (-14.38 = -13.99 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:52 2006