Locus 4163

Sequence ID 3L_DroMel_CAF1
Location 12,154,903 – 12,154,996
Length 93
Max. P 0.529198
window6462

overview

Window 2

Location 12,154,903 – 12,154,996
Length 93
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.42
Mean single sequence MFE -22.50
Consensus MFE -13.87
Energy contribution -14.43
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.69
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.529198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12154903 93 + 23771897
UGAUACCCGCUGUCGUUAGGCAAUCACA------------AGGGAAUUUUUU-CGAUGUUU--------------UUUUUUAAUUAUCCUAUUAAGAUUCACUUUGCUUAACAACGGUGU
.......((((((.(((((((((.....------------((.(((((((..-.((((.((--------------......)).)))).....))))))).))))))))))).)))))). ( -22.60)
>DroSec_CAF1 32028 117 + 1
UGAUACCCGGUGGCGUUAGGCAAUCACAAUGUCUAAUAAAAGGGAAUUUUUU-CGAUGUUUUUUGUU--UUAUUUUUUUUUAAUUAUCCUAUUAAGAUUCACUUUGCUUAACAACGGUGU
..(((((..(((((((((((((.......)))))))).((((.(((((((..-.((((.........--...............)))).....))))))).)))))))..))...))))) ( -20.36)
>DroSim_CAF1 32477 118 + 1
UGAUACCCGCUGGCGUUAGGCAAUCAGAAUGUCUAAUAAAAGGGAAUUUUUU-CGAUGUUUUUUGUGUGUUAUU-UUUUUUAAUUAUCCUAUUAAGAUUCACUUUGCUUAACAACGGUGU
.......(((((..(((((((((...((((...(((((..(((((((.....-....)))))))...)))))..-...((((((......))))))))))...)))))))))..))))). ( -23.70)
>DroEre_CAF1 29388 100 + 1
UGAUACC---UGUCGUUAAGUAAUCACCAUGCUUACUAAAAGGGAAUUUUUU--GAUGGG---------------UUUUUUAAUUAUCCUAUUAAGAUUCACUUUACUUAACAACGGUGU
..(((((---.((.(((((((((...((.............))(((((..((--((((((---------------............)))))))))))))...))))))))).))))))) ( -23.92)
>DroYak_CAF1 32185 102 + 1
UGAUACC---UGUCGUUAAGCAAUCACAAUGCCUAAUAAAAGGGAAUUUUUUUCGAUUGG---------------AUUUUUAAUUAUCCUAUUAAGAUUCACUUUGCUUAACAACGCUGU
.......---.((.(((((((((........(((......)))(((((((....(((.((---------------((........)))).))))))))))...))))))))).))..... ( -21.90)
>consensus
UGAUACCCG_UGUCGUUAGGCAAUCACAAUGCCUAAUAAAAGGGAAUUUUUU_CGAUGUUU______________UUUUUUAAUUAUCCUAUUAAGAUUCACUUUGCUUAACAACGGUGU
..(((((....((.(((((((((........(((......)))(((((((....((((..........................)))).....)))))))...))))))))).))))))) (-13.87 = -14.43 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:51 2006