Locus 4161

Sequence ID 3L_DroMel_CAF1
Location 12,149,179 – 12,149,282
Length 103
Max. P 0.637692
window6459

overview

Window 9

Location 12,149,179 – 12,149,282
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -28.62
Consensus MFE -20.85
Energy contribution -21.93
Covariance contribution 1.08
Combinations/Pair 1.11
Mean z-score -1.17
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.637692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12149179 103 - 23771897
UUUACGUACUAUACAUAGAUAAAUUUUCCGGGUAAUCGGCGGAAAUUGAGU------------UAAAGUUUUGUGUCCGGUUGGCGCCAGUU---GGC--AAUUGGUGCUGGCCAACUUU
............((((((((((..((((((.........)))))).....)------------))....)))))))..(((..((((((((.---...--.))))))))..)))...... ( -28.30)
>DroSec_CAF1 26380 103 - 1
UUUACGUACUAUACAUAUAUACAUUUUACGGGUAAUCGGCGGAAAUUGAGU------------UAAACUUUUGUGUCCGGUUGGCGCCAGUU---GGC--AAUUGGUGCUGGCCAACUUU
....((((..((..........))..))))(((.......(((....(((.------------....))).....)))(((..((((((((.---...--.))))))))..))).))).. ( -26.80)
>DroSim_CAF1 26751 103 - 1
UUUACGUACUACACAUAUAUAAAUUUUCCGGGUAAUCGGCGGAAAUUGAGU------------UAAACUUUUGUGUCCGGUUGGCGCCAGUU---GGC--AAUUGGUGCUGGCCAACUUU
..........(((((.........((((((.........))))))..(((.------------....))).)))))..(((..((((((((.---...--.))))))))..)))...... ( -29.50)
>DroEre_CAF1 23745 94 - 1
UUUACGUAU---------AUAACUUUUCCGGGUAAUCGGCGGAAAUUGACG------------UAAAGUUUUGUGUCCGGUUGGCGCCAUUU---GGC--CAUUGGUGCUGGCCAACUUU
(((((((..---------......((((((.........))))))...)))------------))))...........(((..((((((...---...--...))))))..)))...... ( -29.10)
>DroYak_CAF1 26660 99 - 1
UUUACGUAUU-------UUUAACUUUUCCGGAUAAUCGGCGGAAAUUGAGC------------UAAAGUUUUGUGUCCGGUUGGCGCCAGUUGGUGGC--CAUUGGUGCUGUCCAAGUUU
..........-------............(((((..(((((((....((((------------....))))....))).))))((((((((.((...)--))))))))))))))...... ( -26.40)
>DroAna_CAF1 24462 107 - 1
-UUGCGAGC---------AUAACUUGGCCGGAUUUUCGCCCAUAAUCGAGUUGCAGUUAAGAUUAAAGUUUUGUGUCCGGUUGGCGCCACUU---GGCCAAAAUGGCGCUGGCCAACUUU
-....(..(---------(((((((((.(((....))).)).(((((.............)))))))))..))))..)(((..((((((.((---.....)).))))))..)))...... ( -31.62)
>consensus
UUUACGUACU_______UAUAAAUUUUCCGGGUAAUCGGCGGAAAUUGAGU____________UAAAGUUUUGUGUCCGGUUGGCGCCAGUU___GGC__AAUUGGUGCUGGCCAACUUU
........................((((((.........)))))).................................(((..(((((((((........)))))))))..)))...... (-20.85 = -21.93 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:48 2006