Locus 416

Sequence ID 3L_DroMel_CAF1
Location 1,219,240 – 1,219,338
Length 98
Max. P 0.981912
window611

overview

Window 1

Location 1,219,240 – 1,219,338
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 73.24
Mean single sequence MFE -31.15
Consensus MFE -24.88
Energy contribution -25.38
Covariance contribution 0.50
Combinations/Pair 1.17
Mean z-score -1.74
Structure conservation index 0.80
SVM decision value 1.90
SVM RNA-class probability 0.981912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1219240 98 + 23771897
CAUCUGUAGCUGCGAUCCGCAGUAAGAAUUUGUGGCUCGUACGGAUCGGUGCUUCUUUUCUCUGUACGGAUCCCAUCGGAUAUAGAAUCGGAAACGGA
..((((((.((((((.((((((.......)))))).))))..(((((.((((...........)))).)))))....)).)))))).(((....))). ( -34.50)
>DroEre_CAF1 5632 85 + 1
CAACCGUA-CUGCGAUCCGCAGUAGGAAUUUGUGGGUCGUACGGAUCGGUGCUUCUUUUCUCUGUACGGAUCCCAUC------------GGCAUCGGC
...(((..-.((((((((((((.......)))))))))))).(((((.((((...........)))).)))))...)------------))....... ( -31.90)
>DroYak_CAF1 5632 86 + 1
CAACCGCAGCUGCGAUCCGCAGUAAGAACUUGUGGGUCGUACGGAUCGGUGCUUCUUUUCUCUGUGCGGAUCCAAUC------------GGCGUCGGA
...(((..(((((((((((((((....)).))))))))))..(((((.(..(...........)..).)))))....------------)))..))). ( -35.70)
>DroAna_CAF1 6073 91 + 1
CAUUC-CAUUGGCUCUUCUCAGUUAGCGUUUGUGGGUCGUACGGAUCGGUGCGUCGGUUCAUUGUACGGAUCCAAAAAAAAAUUC----G--AUCGGA
...((-(...(((((....(((.......))).)))))....(((((.(((((.........))))).)))))............----.--...))) ( -22.50)
>consensus
CAACCGCAGCUGCGAUCCGCAGUAAGAAUUUGUGGGUCGUACGGAUCGGUGCUUCUUUUCUCUGUACGGAUCCAAUC____________GGCAUCGGA
...(((.....(((((((((((.......)))))))))))..(((((.((((...........)))).))))).....................))). (-24.88 = -25.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:21 2006