Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,146,867 – 12,146,958 |
Length | 91 |
Max. P | 0.500000 |
Location | 12,146,867 – 12,146,958 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -12.18 |
Energy contribution | -11.73 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.88 |
Structure conservation index | 0.54 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12146867 91 - 23771897 GGCAG--GACGAAAGCGC-------UGAGUGCAGAUGAGGACUGCAAUAAACUGC------CAUACAUAAGUGAAAAUUGUGAAAUGAA-AA----CUUGCGCGAGCAUAA (((((--(.(....))..-------....(((((.......))))).....))))------)...(((((.......))))).......-..----..(((....)))... ( -23.20) >DroPse_CAF1 25331 106 - 1 GGCAGGGGCCGAAAGAGGUGAGUGGUAAGUGCGGAUGAGGACUGCAAUAAACUACAUACUACAUACAUAAGUGAAAACUGUGAAAUGAA-AA----CUGGCGCGAGCGUAA .((..(.((((...(.((((.(((((...(((((.......)))))....))))).)))).)...((((.((....)))))).......-..----.)))).)..)).... ( -27.30) >DroEre_CAF1 21429 91 - 1 GGCAG--GACGAAAGCGC-------UGAGUGCAGAUGAGGACUGCAAUAAACUGC------CAUACAUAAGUGAAAAUUGUGAAAUGAA-AA----CUUGCGCGAGCAUAA (((((--(.(....))..-------....(((((.......))))).....))))------)...(((((.......))))).......-..----..(((....)))... ( -23.20) >DroYak_CAF1 24275 91 - 1 GGCAG--GACGAAAGCGC-------UGAGUGCAGAUGAGGACUGCAAUAAACUGG------CGUACAUAAGUGAAAAUUGUGAAAUGAA-AA----CUUGCGCGAGCAUAA .((((--..(....((((-------...))))......)..))))......((.(------((((....(((....(((....)))...-.)----))))))).))..... ( -20.40) >DroAna_CAF1 22374 81 - 1 ----------------GC-------UGAGUGCAGAUGAGGACUGCAAUAAACUGG------CAUACAUAAGUGAAAAUUGUGAAAUGAA-UACUGACUGGCGCGAGCAUAA ----------------((-------(..((((((.(.((...(((.........)------))..(((((.......))))).......-..)).))).)))).))).... ( -14.30) >DroPer_CAF1 25361 107 - 1 GGCAGGGGCCGAAAGAGGUGAGUGGUAAGUGCGGAUGAGGACUGCAAUAAACUACAUACUACAUACAUAAGUGAAAACUGUGAAAUGAAAAA----CUGGCGCGAGCGUAA .((..(.((((...(.((((.(((((...(((((.......)))))....))))).)))).)...((((.((....))))))..........----.)))).)..)).... ( -27.30) >consensus GGCAG__GACGAAAGCGC_______UGAGUGCAGAUGAGGACUGCAAUAAACUGC______CAUACAUAAGUGAAAAUUGUGAAAUGAA_AA____CUGGCGCGAGCAUAA .............................(((((.......)))))...................((((.((....)))))).................((....)).... (-12.18 = -11.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:46 2006