Locus 4157

Sequence ID 3L_DroMel_CAF1
Location 12,145,296 – 12,145,410
Length 114
Max. P 0.529771
window6453

overview

Window 3

Location 12,145,296 – 12,145,410
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.16
Mean single sequence MFE -18.96
Consensus MFE -5.82
Energy contribution -6.46
Covariance contribution 0.64
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.31
SVM decision value -0.01
SVM RNA-class probability 0.529771
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12145296 114 - 23771897
AUAUCUAAAUUGUAUUUGCCAUUGAAAAGUUUAUACCUAUAU---GUAUAAUAUGGAACCUUUCUAAAUAUAGUAAUUGAUACGAAAUUGCAAAAA--UGAUGGAUGA-ACAUCUCAACA
.((((((...((((((((.....((((.(((.....((((((---.....))))))))).))))))))))))((((((.......)))))).....--...)))))).-........... ( -15.70)
>DroSec_CAF1 22626 105 - 1
AUAUCCAAAUUGUAUUUGCCAUUGGAAAGUUUAUACCCA--------------UUGAACCUUUCUAAAUACAGUAAUUGAUACGAAAUUGCAAAAAACAGAUGCACAA-ACAUCUCGACA
..........((((((((...((((((((((((......--------------.)))).)))))))).....((((((.......))))))......))))))))...-........... ( -18.70)
>DroSim_CAF1 22896 105 - 1
AUAUCCAAAUUGUAUUUGCCAUUGGAAAGUUUAUACCCA--------------UUGAACCUUUCUAAAUAUAGUAAUUGAUACGAAAUUGCAAAAAACAGAUGCACAA-ACAUCUCGACA
..........((((((((...((((((((((((......--------------.)))).)))))))).....((((((.......))))))......))))))))...-........... ( -18.70)
>DroEre_CAF1 19888 98 - 1
AUAUCUAAAUUGUAUUCAAGACUGGAAAGUUUUGA-----AU---GCGUAAGAUUGAACCCUUCUAAAUAUA--------A---CAACUGGAA--GGCAGAGGGUCAA-GCAUCUCGACA
..((((....(((((((((((((....))))))))-----))---)))..)))).....(((((((......--------.---....)))))--))..((((.....-...)))).... ( -27.10)
>DroYak_CAF1 22636 110 - 1
AUAUCCUAAUUGUAUUUACCAUUGGAAAGUUUUUU-----GUUUAUCAUAAGUUUGAACCUUUCUAAAUAUAGUAGUACAU---CAAUUGCAC--AGCAAAUGGUCAAAACAUCUCCACA
..........(((.((.((((((((((((......-----(((((.........))))))))))).......(((((....---..)))))..--....)))))).)).)))........ ( -14.60)
>consensus
AUAUCCAAAUUGUAUUUGCCAUUGGAAAGUUUAUACC_A__U______UAA__UUGAACCUUUCUAAAUAUAGUAAUUGAUACGAAAUUGCAAAAAACAGAUGGACAA_ACAUCUCGACA
........((((((((((.....((((.((((.......................)))).)))))))))))))).........................((((.......))))...... ( -5.82 =  -6.46 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:42 2006