Locus 4155

Sequence ID 3L_DroMel_CAF1
Location 12,140,844 – 12,140,953
Length 109
Max. P 0.615898
window6451

overview

Window 1

Location 12,140,844 – 12,140,953
Length 109
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 81.24
Mean single sequence MFE -25.52
Consensus MFE -8.80
Energy contribution -9.72
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -2.34
Structure conservation index 0.34
SVM decision value 0.17
SVM RNA-class probability 0.615898
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12140844 109 - 23771897
UUUGUAGCCUACACAUCUUGGUUCAUGAAAAACAUAUUCCAAAAUGUAAUGGCUAUUAAAAUUUCACCGAGCCUUUUGUUUGCCUUGAA------ACGGGUGGUUCAUUAA-AAAU
...((((((...((((.((((...(((.....)))...)))).))))...))))))............(((((.(((((((......))------))))).))))).....-.... ( -27.40)
>DroSec_CAF1 18227 116 - 1
UUUGUAGCCUACACUUCUUGGUUCAUGAAGAAAAUAUUCCAGAAUGUACAGGCUAUUAAAAUUUCAGCAAACCUUUUGCUUGCCUUGCAACCACAACGUGAGGUUCAUUAGAAAAU
...((((((((((.((((.((...((.......))...)))))))))..))))))).....(((((((((.....))))).((((..(.........)..))))......)))).. ( -24.70)
>DroSim_CAF1 18434 116 - 1
UUUGUAGCCUACACAUCUUGGUUCAUGAAAAACAUAUUCCAGAAUGUAAAGGCUAUUAAAAUUUCAGCAAGCCUUUUGUUUGCCUUGCAACCACAACGUGAGGUUCAUUAAAAAAU
...(((((((..((((..(((...(((.....)))...)))..))))..)))))))..........((((((.....))))))..((.((((.(.....).))))))......... ( -26.10)
>DroEre_CAF1 15589 115 - 1
UUUGUAACCGAACCUUCUUGGUUCAGGAAAAACAUAUUCCUGAAUGUAAAGGAUAUUAACAUUUCAGCGAGCUCUUUGUUUGCCCCAAAACCACAACGUGAGGUUAAUUAA-AAAU
....(((((..((.(((((.(((((((((.......)))))))))...))))).............((((((.....))))))..............))..))))).....-.... ( -26.40)
>DroYak_CAF1 18406 105 - 1
UGUGUAACCUACACUUCUU----------ACAAAUAUUCCUGAAUGUAAAGGAUAUUAACAUUUCAGCGAGCUUUUUGUUUGCCCUAAAACCACAACGUGAGGUUAAUUAA-CAAU
(((.((((((.(((.....----------...(((((.(((........)))))))).........((((((.....))))))..............)))))))))....)-)).. ( -23.00)
>consensus
UUUGUAGCCUACACUUCUUGGUUCAUGAAAAACAUAUUCCAGAAUGUAAAGGCUAUUAAAAUUUCAGCGAGCCUUUUGUUUGCCUUGAAACCACAACGUGAGGUUCAUUAA_AAAU
.....(((((.(((...................(((((....)))))...................((((((.....))))))..............))))))))........... ( -8.80 =  -9.72 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:40 2006