Locus 4153

Sequence ID 3L_DroMel_CAF1
Location 12,136,100 – 12,136,190
Length 90
Max. P 0.813544
window6449

overview

Window 9

Location 12,136,100 – 12,136,190
Length 90
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 88.02
Mean single sequence MFE -32.95
Consensus MFE -28.49
Energy contribution -29.05
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.86
SVM decision value 0.66
SVM RNA-class probability 0.813544
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12136100 90 + 23771897
U-----------CGGUCUGAGUGACGGUAAAGCUGUCAACAGUCAGCGGCGCGUCGUCACUUGAGCCGCAUUGUUGUACAAGUAUUUUGUCGCACGACCAA
.-----------.((((.(.(((((((.((.((((((((((((..(((((.((........)).)))))))))))).)).))).))))))))).))))).. ( -34.40)
>DroSec_CAF1 13660 90 + 1
U-----------CGGUCUGAGUGACGCUAAAGCUGUCAACAGUCAGCGGCGCGUCGUCACUUGAGCCGCAUUGUUGUACAAGUAUUUUGUCGCACGGGCAA
.-----------..(((((.((((((..((.((((((((((((..(((((.((........)).)))))))))))).)).))).)).)))))).))))).. ( -34.30)
>DroSim_CAF1 13694 90 + 1
U-----------CGGUCUGAGUGACGCUAAAGCUGUCAACAGUCAGCGGCGCGUCGUCACUUGUGCCGCAUUGUUGUACAAGUAUUUUGUCGCACGGGCAA
.-----------..(((((.((((((..((.((((((((((((..((((((((........))))))))))))))).)).))).)).)))))).))))).. ( -38.10)
>DroEre_CAF1 11000 89 + 1
U-----------UGGUCUGGGUGACGGUAAAGCUGUCAACAGUCAGCGGCGCGUCGACACUUGAGCCGCAUUGUUGUGCAAGUAUU-UGUCGCACGGGCAA
.-----------..(((((.(((((((....((((((((((((..(((((.((........)).)))))))))))).)).)))..)-)))))).))))).. ( -34.10)
>DroYak_CAF1 13669 89 + 1
U-----------CGGCCUGAGUGACGCUAAAGCUGUCAACAGUCAGCGGCGCGUCGUCACUUGAGCCGCAUUGUUUUGCAAGUAUU-UGUCGCACGGGCAA
.-----------..(((((.(((((((....))(((.((((((..(((((.((........)).)))))))))))..)))......-.))))).))))).. ( -32.80)
>DroAna_CAF1 14433 99 + 1
UGUGGGUAUGUGGGGUGUGGGUAACGGUAAAGCUGUCAACAGUCGUUGUCGCGUCGUCACUUGAGCUGCAUUGUUGUACAAGUAU--UGUCGCACGGGCAA
..............((.(((..((((.....((((....))))))))..)(((.((..(((((...((((....)))))))))..--)).))).)).)).. ( -24.00)
>consensus
U___________CGGUCUGAGUGACGCUAAAGCUGUCAACAGUCAGCGGCGCGUCGUCACUUGAGCCGCAUUGUUGUACAAGUAUU_UGUCGCACGGGCAA
..............(((((.((((((.....((((((((((((..(((((.((........)).)))))))))))).)).)))....)))))).))))).. (-28.49 = -29.05 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:38 2006