Locus 4152

Sequence ID 3L_DroMel_CAF1
Location 12,130,503 – 12,130,593
Length 90
Max. P 0.546198
window6448

overview

Window 8

Location 12,130,503 – 12,130,593
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 83.42
Mean single sequence MFE -18.93
Consensus MFE -13.53
Energy contribution -13.95
Covariance contribution 0.42
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.03
SVM RNA-class probability 0.546198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12130503 90 + 23771897
UUUAGUUAAUUUUAUGAAC---UUUUUGUUUGCAAAAUUGAGUUAAAAACUU--AUUUAAGGGAGCUGCCC--GAGUAGCUCAACAAAAGCCACCUA
(((((((((((((..((((---.....))))..)))))))).))))).....--........(((((((..--..)))))))............... ( -18.80)
>DroSec_CAF1 7735 92 + 1
UUUAGUUAAUUUUAUGAAC---UUUUUGUUUGCAAAAUUAAGUUAAAAACUU--AUUUAAGGGAGCUGCCCGGGAGUAGCUCACCAAAAGCCGCCUA
(((((((((((((..((((---.....))))..)))))))).))))).....--......(((((((((......))))))).))............ ( -21.90)
>DroSim_CAF1 7700 92 + 1
UUUAGUUAAUUUUAUGAAC---UUUUUGUUUGCAAAAUUAAGUUAAAAACUU--AUUUAAGGGAGCUGCCUGGGAGUAGCUCACCAAAAGCCGCCUA
(((((((((((((..((((---.....))))..)))))))).))))).....--......(((((((((......))))))).))............ ( -21.90)
>DroEre_CAF1 5333 90 + 1
UUUAGUUAAUUUUAUGAAC---AUUUUGUUUGCGAAAUUAAGUUAAAAACUU--AUUUUAGAGAGCUGCCC--GAGUAGCUUACGAAAAGCCGCCAA
(((((((((((((..((((---.....))))..)))))))).))))).....--.((((.(.(((((((..--..))))))).).))))........ ( -17.20)
>DroYak_CAF1 7714 90 + 1
UUUAGUUAAUUUUAUGAAC---AUUUUGUUUGCGAAAUUAAGUUAAAAACUU--AUUUUAGAGAGCUGCUC--GAGCAGCUUACCGAAAGCCGCCAA
(((((((((((((..((((---.....))))..)))))))).))))).....--.(((..(.(((((((..--..))))))).)..)))........ ( -21.00)
>DroPer_CAF1 7562 80 + 1
UUUAGUUAAUUUUAUGAACACAUUUUUGUUUGCGAAAUUAAGUUUAAAACUUGUAUUUUA-----------------AGUUUACCGAAACCAGCCAC
.....((((((((..(((((......)))))..))))))))((((.(((((((.....))-----------------)))))....))))....... ( -12.80)
>consensus
UUUAGUUAAUUUUAUGAAC___UUUUUGUUUGCAAAAUUAAGUUAAAAACUU__AUUUAAGGGAGCUGCCC__GAGUAGCUCACCAAAAGCCGCCAA
(((((((((((((..((((........))))..)))))))).)))))...............(((((((......)))))))............... (-13.53 = -13.95 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:37 2006