Locus 4151

Sequence ID 3L_DroMel_CAF1
Location 12,126,182 – 12,126,288
Length 106
Max. P 0.937370
window6447

overview

Window 7

Location 12,126,182 – 12,126,288
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.91
Mean single sequence MFE -34.35
Consensus MFE -21.40
Energy contribution -22.15
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -1.80
Structure conservation index 0.62
SVM decision value 1.26
SVM RNA-class probability 0.937370
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12126182 106 + 23771897
UAUUGCCCAAUGGGUGAGGAUCAAUCCCACCAGGUGGCACGAUCGUAUUUCCAUGCGUGUGGAGCUCUACGGCUGCGAUUACAGUAAAUUUUGAAUGGAUUC---AUUG-
...(((((....((((.(((....)))))))..).)))).(((((((..(((((....)))))(((....)))))))))).((((.(((((.....))))).---))))- ( -30.10)
>DroPse_CAF1 3344 101 + 1
CAUUGCCCAGUGGGUGAGGAUAAAUCCCACCCGCUGGCACGAUCGCAUAUCCAUGCGCACGGAGCUCUACGGCUGCGACUACAGUAAGUGCUGC------UA---CUUGA
....((.(((((((((.(((....))))))))))))((((...(((((....)))))..((.((((....)))).))..........)))).))------..---..... ( -38.80)
>DroGri_CAF1 3139 92 + 1
CAUUGCACAGUGGGUGCGCGUUAAUCCCACACGCUGGCACGAUCGCAUCUCCAUGCGUGUCGAGCUCUACGGCUGUGAAUACAGUGAGUGU-----------------A-
...(((((.(((((...........))))).(((((.(((((((((((....))))).))).((((....)))))))....))))).))))-----------------)- ( -32.20)
>DroWil_CAF1 4277 106 + 1
UAUAGCACAAUGGGUUCGCAUUAAUCCCACACGCUGGCAUGAUCGAAUUUCGAUGCGUGUUGAGCUCUAUGGUUGUGAUUAUAGUAAGUACAGUAGGAA-UA---AUUUU
((((((((((((((...........)))....(((((((((((((.....)))).)))))).)))......)))))).)))))................-..---..... ( -24.30)
>DroAna_CAF1 3180 110 + 1
CAUCGCCCAGUGGGUGAGAAUUAAUCCCACCCGCUGGCACGAUCGCAUCUCCAUGCGUGUGGAGCUUUACGGCUGCGAAUACAGUGAGUUUUCAAUAAAGCUAUCUUUAA
..(((.((((((((((.((.....)).))))))))))..)))(((((..(((((....)))))(((....))))))))........((((((....))))))........ ( -36.70)
>DroPer_CAF1 3331 101 + 1
CAUUGCCCAGUGGGUGAGGAUAAAUCCCACCCGCUGGCACGAUCGCAUAUCCAUGCGCACGGAGCUCUACGGCUGCGACUACAGUAAGUGCUGC------UC---CUUGA
...((((.((((((((.(((....)))))))))))))))....(((((....)))))((.(((((..(((.((((......))))..)))..))------))---).)). ( -44.00)
>consensus
CAUUGCCCAGUGGGUGAGGAUUAAUCCCACCCGCUGGCACGAUCGCAUAUCCAUGCGUGUGGAGCUCUACGGCUGCGAAUACAGUAAGUGCUGA______UA___AUUGA
....((.(((((((((.(........))))))))))))....(((((..(((((....)))))(((....))))))))................................ (-21.40 = -22.15 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:36 2006