Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,124,133 – 12,124,240 |
Length | 107 |
Max. P | 0.662607 |
Location | 12,124,133 – 12,124,240 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -19.76 |
Energy contribution | -20.33 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.72 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12124133 107 - 23771897 ---GCUAUUUUUAGGAGCUACGUUUGCUUGGCUUAGAUUCCUUAUAGUUCCUAUACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACUU ---((((((..(((((((((......((......))........)))))))))............(((...(((((((.....)))))))..)))))))))......... ( -28.14) >DroSec_CAF1 1377 107 - 1 ---GAUGUUUUUAGAAGCUACGUUUGCUUGGCUUAGUUUCCUUAUAUCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU ---(((((((...(((((((.(((.....))).)))))))............))))))).((((((((((((((((((.....)))))))...)))..))).)))))... ( -28.96) >DroSim_CAF1 1371 92 - 1 ---GAUGUUUUUAGAAGCU---------------AGUUUCCUUAUAUCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU ---(((((((..(((....---------------((....))....)))...))))))).((((((((((((((((((.....)))))))...)))..))).)))))... ( -24.00) >DroYak_CAF1 1436 110 - 1 AGCGCCGUUUCUAAGAACUACGUUAGCUUGGCUUAGAUUCCACAUAGUUCUUAUACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGGCAAUCACUU ...(((((...(((((((((.((...((......)).....)).))))))))).)).........(((...(((((((.....)))))))..)))....)))........ ( -28.60) >consensus ___GAUGUUUUUAGAAGCUACGUUUGCUUGGCUUAGAUUCCUUAUAGCUCUUAAACAUCAUGAUCGCUUGUAGGGCUUAAGAAGAGCCUUUUGGCAGUAGCUGAUCACAU ...(((((.....(((((((.(((.....))).)))))))...)))))............((((((((((((((((((.....)))))))...)))..))).)))))... (-19.76 = -20.33 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:35 2006