Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,202,954 – 1,203,062 |
Length | 108 |
Max. P | 0.529994 |
Location | 1,202,954 – 1,203,062 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -32.45 |
Consensus MFE | -23.52 |
Energy contribution | -24.27 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.72 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1202954 108 - 23771897 CCCAAGUGGUAAUCCAGAUGAUUAAUCACACUUUCGGCCGGCCAUAAAACC---AGAGCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUGAAAC---------C ((((((((.(((((.....)))))....)))))((((((((........))---.).)).)))..)))(((.(((((((.((......)).)))))))..))).......---------. ( -31.10) >DroAna_CAF1 32070 116 - 1 CCCAAGUUGUAAUCCAGAUGAUUAAUCACACUCUCGG----CCAUAAAACCCAGAGACCACAACUGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAGCCCCGGCUUC ((((.(((((......(((.....)))...((((.((----........)).))))...)))))))))(((.(((((((.((......)).)))))))..)))....((((....)))). ( -37.00) >DroEre_CAF1 17322 107 - 1 CCCAAGUGGCAAUCCGGAUGAUUAAUCACUCUUUCGGCCGGCCAUAA-ACC---AGACCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAGC---------C (((..(((((...(((((.((........)).)))))...)))))..-...---.(........))))(((.(((((((.((......)).)))))))..))).......---------. ( -32.10) >DroYak_CAF1 19496 107 - 1 CCCAAGUGGUAAUCCAAAUGAUUAAUCACACUUUCGGCUGGCCAUAA-ACC---AGACCACGACCGCGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAC---------C .....(((((((((.....))))............((((((......-.))---)).))...))))).(((.(((((((.((......)).)))))))..))).......---------. ( -29.60) >consensus CCCAAGUGGUAAUCCAGAUGAUUAAUCACACUUUCGGCCGGCCAUAA_ACC___AGACCACGACCGGGGGCUAAUAGCUGCAGUCAAGUGGAGCUGUUUCGCCAUUAAAC_________C (((..(((((((((.....)))).)))))......((....))......................)))(((.(((((((.((......)).)))))))..)))................. (-23.52 = -24.27 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:20 2006