Locus 4144

Sequence ID 3L_DroMel_CAF1
Location 12,103,867 – 12,103,987
Length 120
Max. P 0.994068
window6436

overview

Window 6

Location 12,103,867 – 12,103,987
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -39.50
Consensus MFE -34.90
Energy contribution -34.94
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -1.98
Structure conservation index 0.88
SVM decision value 2.45
SVM RNA-class probability 0.994068
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12103867 120 + 23771897
UCGAUAGCCAGGCACUGGAAUGGGCUGAGCACUACAAAAUGCACGGCUUCCAUCAUGUCAAGCAGAUGGACAACAUCUACAACGUGGUGAUCCGUACGAACUAUUCGAACGUGCACGGUU
.....((((..((((.(((..((((((.(((........))).)))))).((((((((...(.(((((.....))))).).)))))))).)))((.(((.....))).))))))..)))) ( -38.50)
>DroSec_CAF1 4990 120 + 1
UCGAUAGCCAGGCACUGGAAUGGGCUGAGCACUACAAGAUGCACGGCUUCAAUCAUGUCAAGCAGAUGGACAACAUCUACAACGUGGUGAUCCGUACGAACUACUCGAACGUGCACGGCU
.....((((..((((.(((...(((((.(((........))).)))))(((.((((((...(.(((((.....))))).).))))))))))))((.(((.....))).))))))..)))) ( -38.30)
>DroSim_CAF1 4370 120 + 1
UCGAUAGCCAGACACUGGAAUGGGCUGAGCACUACAAGAUGCACGGCUUCCAUCAUGUCAAGCAGAUGGACAACAUCUACAACGUGGUGAUCCGCACGAACUACUCGAACGUGCACGGCU
.....((((.......(((..((((((.(((........))).)))))).((((((((...(.(((((.....))))).).)))))))).)))(((((...........)))))..)))) ( -38.30)
>DroEre_CAF1 4507 120 + 1
UCGACAGCCAGGCUCUGGAAUGGGCCGAGCACUACAAGAUGCACGGCUUCCACCAUGUCAAGCAGAUGGACAACAUCUACAACGUGGUCAUCCGCACCAACUACUCCAAUGUGCACGGCG
......(((.((....(((...(((((.(((........))).))))))))(((((((...(.(((((.....))))).).)))))))...))((((.............))))..))). ( -37.32)
>DroYak_CAF1 4508 120 + 1
UCGACAGCCAGGCUCUGGAAUGGGCCGAGCACUACAAGAUGCACGGCUUCCACCACGUCAAGCAGAUGGACAACAUCUACAACGUGGUGAUCCGCACCAACUACUCCAAUGUCCAUGGCG
......(((((((..((((.(((((((.(((........))).))))...((((((((...(.(((((.....))))).).))))))))...........))).))))..).)).)))). ( -45.10)
>consensus
UCGAUAGCCAGGCACUGGAAUGGGCUGAGCACUACAAGAUGCACGGCUUCCAUCAUGUCAAGCAGAUGGACAACAUCUACAACGUGGUGAUCCGCACGAACUACUCGAACGUGCACGGCU
......(((.......(((..((((((.(((........))).)))))).((((((((...(.(((((.....))))).).)))))))).)))(((((...........)))))..))). (-34.90 = -34.94 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:25 2006