Locus 4143

Sequence ID 3L_DroMel_CAF1
Location 12,103,587 – 12,103,707
Length 120
Max. P 0.985949
window6435

overview

Window 5

Location 12,103,587 – 12,103,707
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -38.29
Consensus MFE -35.34
Energy contribution -35.26
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.92
SVM decision value 2.02
SVM RNA-class probability 0.985949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12103587 120 - 23771897
GAAGUAGAAGAGACGCACCAGACCCACCACAUACUCCUCGUGCUUGUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGUUGGUGUUGCCACAGCUCGAAGAAGUGCUCCAACAU
.........(((.(((....(......)......((.(((.(((.((.(((...((((((((.((((........))))...)))))))).))).))))).))).)).))))))...... ( -34.50)
>DroSec_CAF1 4710 120 - 1
GAAGUAGAAGAGACGCACCAGACCCACCACAUACUCCUCGUGCUUGUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGCUGGUGCUGCCACAGCUCGAAGAAGUGCUCCAACAU
.........((((((((((((.(((..............((((.....)))).(((((((..((.....))..))))))).)))))))))).((....))........)).)))...... ( -38.60)
>DroSim_CAF1 4090 120 - 1
GAAGUAGAAGAGACGCACCAGACCCACCACAUACUCCUCGUGCUUGUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGCUGGUGCUGCCACAGCUCGAAGAAGUGCUCCAACAU
.........((((((((((((.(((..............((((.....)))).(((((((..((.....))..))))))).)))))))))).((....))........)).)))...... ( -38.60)
>DroEre_CAF1 4227 120 - 1
GAAGUAGAAGAGGCGCACCAGACCCACCACGUACUCCUCGUGCUUCUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGCUGGUGCUGCCACAGCUCGAAGAAGUGCUCCAGCAU
...........((((((((((.(((..............((((.....)))).(((((((..((.....))..))))))).)))))))))).)))...(((.((........)).))).. ( -44.30)
>DroYak_CAF1 4228 120 - 1
GAAGUAGAAGAGACGCACCAGACCGACCACAUACUCCUCGUGCUUCUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGCUGAUGCUGCCACAGCUCGAAGAAGUGCUCCAACAU
.........((((.((((.((...............)).)))).))))((((.(((((((..((.....))..))))))).((((((.((....))))))))......))))........ ( -35.46)
>consensus
GAAGUAGAAGAGACGCACCAGACCCACCACAUACUCCUCGUGCUUGUCGUACAUCACCGACCACACCAUGUCAUCGGUGAAGGGCUGGUGCUGCCACAGCUCGAAGAAGUGCUCCAACAU
.........((((((((((((.(((..............((((.....)))).(((((((..((.....))..))))))).)))))))))).((....))........)).)))...... (-35.34 = -35.26 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006