Locus 414

Sequence ID 3L_DroMel_CAF1
Location 1,201,083 – 1,201,191
Length 108
Max. P 0.625083
window609

overview

Window 9

Location 1,201,083 – 1,201,191
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.23
Mean single sequence MFE -35.75
Consensus MFE -23.62
Energy contribution -24.02
Covariance contribution 0.39
Combinations/Pair 1.25
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value 0.19
SVM RNA-class probability 0.625083
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1201083 108 - 23771897
----------GCUCGGAUC-GA-AACAAUUUCGAUUCAAUUGCAUCUAUGGCAGAGCGGGGACGUGGACACGAUGUAGGUCUAUGGGAUUGCCAUUUGCGUCUAAUCGCCGGAGAUCAAC
----------....(((((-((-(.....))))))))..(((.((((.((((...(((....)))((((.(((((..((((.....))))..)).))).))))....)))).))))))). ( -34.40)
>DroSec_CAF1 17775 108 - 1
----------GCUUGGAUC-GA-AACAAUUUCGAUUCAAUUGCAUCUAUGGCAGAGCGGGGACGUGGACACGAUGUAGGUCUAUGGGAUUGCCAUUUGCGGCUAAUCGCCGGAGAUCAAC
----------..(((((((-((-(.....)))))))))).((((((..((.(...(((....))).).)).))))))(((((.((((((((((......))).)))).))).)))))... ( -38.70)
>DroAna_CAF1 30254 106 - 1
----------UCGCGAGUCUGAAAACAAUUUCGAUUCAAUUACAUCUAUGGCAGUCC----ACGGGGACAUGAUGUAGGUCUAUGGGAUUGCCAUUUGCGGCUAAUCGCCGGCGAUCAAC
----------(((((((((.((((....))))))))).....((...((((((((((----.((.((((.........)))).)))))))))))).))((((.....))))))))..... ( -38.60)
>DroEre_CAF1 15509 109 - 1
----------GCUCGGAUC-GACAGCGAUUUCGAUUCAAUUACAUCUGUGGCGGAGCGGGGACGUGGACACGAUGUAGGUCUAUGGGAUUGCCAUUCGCGGCUAAUCGCCGGAGAUCAAC
----------....(((((-((........)))))))...((((((.(((.....(((....)))...)))))))))(((((.((((((((((......))).)))).))).)))))... ( -40.40)
>DroWil_CAF1 24347 119 - 1
UUAUUUCUUCAAGCCAAUU-GCAAACAAUUUCAAUUCAAUUACGUGUAAGGCAGGUCUACAUAUUGUACAUGAUGUAGGUCUUUGGGAAUGCCAUUUCUGGCUAAUCGCUUGAGAUCAAC
.......((((((((((((-(((...((((.......))))...)))))...((..((((((..........))))))..))))).((..((((....))))...)))))))))...... ( -24.90)
>DroYak_CAF1 17548 109 - 1
----------GCGCGGAUC-GACAGCAAUUUCGAUUCCAUUGCAUCUAUGGCAGAGCGGGGACGUGGACACGAUGUAGGUCCAUGGGAUUGCCAUUUGCGGCUAAUCGCCGGAGAUCAAC
----------.....((((-..(.((((...((((((((((((.......)))).(((....)))((((.(......))))).))))))))....))))(((.....))))..))))... ( -37.50)
>consensus
__________GCGCGGAUC_GA_AACAAUUUCGAUUCAAUUACAUCUAUGGCAGAGCGGGGACGUGGACACGAUGUAGGUCUAUGGGAUUGCCAUUUGCGGCUAAUCGCCGGAGAUCAAC
..............(((((.((........)))))))...((((((.....(...(((....))).)....))))))(((((.((((((((((......))).)))).))).)))))... (-23.62 = -24.02 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:19 2006