Locus 4137

Sequence ID 3L_DroMel_CAF1
Location 12,098,641 – 12,098,743
Length 102
Max. P 0.551016
window6428

overview

Window 8

Location 12,098,641 – 12,098,743
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.46
Mean single sequence MFE -39.63
Consensus MFE -28.15
Energy contribution -31.40
Covariance contribution 3.25
Combinations/Pair 1.10
Mean z-score -1.19
Structure conservation index 0.71
SVM decision value 0.03
SVM RNA-class probability 0.551016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12098641 102 + 23771897
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCGGGCUGGCCCUGCUGUCCCUGCAGCUCGUCCAGCGGCUCCUGCUCGUGAUCCUGCUCCUG
((((((....((((.(((((.(....).)))))))))(((((..(((((.(..(((((....)))))..).))))).))))).))))))............. ( -43.70)
>DroGri_CAF1 30649 81 + 1
--------ACAGCUUACCAAUCAGUUCCUUUGGUGGCUGCGCCAACUUGCCCUGCGCCUGAAGCACCUCAUCCUCGAGUUCUUCCUGGG-------------
--------.(((((.(((((.........))))))))))(((...........)))((.((((...(((......)))..))))..)).------------- ( -18.80)
>DroSec_CAF1 8020 102 + 1
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCGGGCUGGCCCUGCUGUCCCUGCAGCUCGCCCAGCGGCUCCUGAUCGUGAUCCAGCUCCUG
..((((((((((((.(((((.(....).)))))))))(((((..(((((.(..(((((....)))))..).))))).)))))......)))...)))))... ( -41.30)
>DroSim_CAF1 7570 102 + 1
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCGGGCUGGCCCUGCUGUCCCUGCAGCUCGUCCAGCGGCUCCUGCUCGUGAUCCUGCUCCUG
((((((....((((.(((((.(....).)))))))))(((((..(((((.(..(((((....)))))..).))))).))))).))))))............. ( -43.70)
>DroEre_CAF1 7479 102 + 1
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCAGGCUGGCCCUGCUGUCCCUGCAGCUCGUCCAGCGGCUCCUGCUCGUGGUCCUGCUCCUG
((((((....((((.(((((.(....).)))))))))(((((..(((((.(..(((((....)))))..).))))).))))).))))))((.......)).. ( -45.20)
>DroYak_CAF1 8023 102 + 1
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCAGGCUGGCCCUGCUGUCCCUGCAGCUCGUCCAGCGGCUCCUGCUCGUGAUCCUGCUCCUG
((((((....((((.(((((.(....).)))))))))(((((..(((((.(..(((((....)))))..).))))).))))).))))))............. ( -45.10)
>consensus
GCGAGUUUCAGCCUUACCGAUGACUUCCUUGGUGGGCGGAGCGGGCUGGCCCUGCUGUCCCUGCAGCUCGUCCAGCGGCUCCUGCUCGUGAUCCUGCUCCUG
((((((....((((.(((((.(....).)))))))))(((((..(((((....(((((....)))))....))))).))))).))))))............. (-28.15 = -31.40 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:17 2006