Locus 4136

Sequence ID 3L_DroMel_CAF1
Location 12,098,416 – 12,098,517
Length 101
Max. P 0.757044
window6427

overview

Window 7

Location 12,098,416 – 12,098,517
Length 101
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 70.30
Mean single sequence MFE -29.70
Consensus MFE -12.17
Energy contribution -13.31
Covariance contribution 1.14
Combinations/Pair 1.38
Mean z-score -1.86
Structure conservation index 0.41
SVM decision value 0.49
SVM RNA-class probability 0.757044
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12098416 101 - 23771897
--UGUGUGUGUGUUUUGAGUCUUAAAAUAUACGCGCGUCGGCCAUUUUGUGCGGCCAAAGGCAACGCAACGCAUGUAUAUAUGUAUGUGCACGAACGCUCGC---G--
--.(((((((((((((((...)))))))))))))))((.(((....(((((..(((...)))..))))).((((((((....))))))))......))).))---.-- ( -36.50)
>DroPse_CAF1 4951 95 - 1
UGUAUGUGUGUGU-UUGUGUCUUAAAAUAUACGCACGACGGCCAUUUUGUAUAG------------CAAGGCACAUACAUAUGAACGUUCACCGGUUCACCGCCCGCC
.((((((((((((-((((....((((((...((.....))...))))))....)------------))).))))))))))))((((........)))).......... ( -24.50)
>DroSim_CAF1 7326 101 - 1
--CGUGUGUGUGUUUUGAGUCUUAAAAUAUACGCGCGUCGGCCAUUUUGUGCGGCCAAAGGCAACGCAACGCAUGUAUAUAUGUAUGUGCACGAAUGCUCGC---G--
--.(((((((((((((((...)))))))))))))))((.(((.((((((((..(((...)))..))))..((((((((....))))))))..))))))).))---.-- ( -36.60)
>DroYak_CAF1 7794 91 - 1
-------GUGUGUUUUGGGUCUUAAAAUAUACGCGCGUCGGCCAUUUUGUGCGGCUAAA-----CGCAACGCACGUAUAUAUGUAUGUGCACGAAUGCUCGC---G--
-------((((((((((.....)))))))))).((((..(((...((((((((......-----)))...((((((((....))))))))))))).))))))---)-- ( -31.00)
>DroAna_CAF1 7230 88 - 1
CGUGUGUGUGUGU-UUAGGUCUUAAAAUAUACGCGCGUCGGCCAUUUUGUGAGGC-------AUUG---CGCAUACAUAUAAAUA----CAUAUACUGUCGC---G--
((.((((((((((-(((.((.(......).))(((((...(((.........)))-------..))---))).......))))))----)))))))...)).---.-- ( -25.10)
>DroPer_CAF1 4934 95 - 1
UGUAUGUGUGUGU-UUGUGUCUUAAAAUAUACGCACGACGGCCAUUUUGUAUAG------------CAAGGCACAUACAUAUGAACGUUCACCGGUUCACCGCCCGCC
.((((((((((((-((((....((((((...((.....))...))))))....)------------))).))))))))))))((((........)))).......... ( -24.50)
>consensus
__UGUGUGUGUGU_UUGAGUCUUAAAAUAUACGCGCGUCGGCCAUUUUGUGCGGC_________CGCAACGCACAUAUAUAUGUAUGUGCACGAAUGCUCGC___G__
..(((((((((((.(((..............((((((..........)))))).............))).))))))))))).((((........)))).......... (-12.17 = -13.31 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:16 2006