Locus 4135

Sequence ID 3L_DroMel_CAF1
Location 12,089,989 – 12,090,087
Length 98
Max. P 0.938159
window6426

overview

Window 6

Location 12,089,989 – 12,090,087
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 75.32
Mean single sequence MFE -21.54
Consensus MFE -10.14
Energy contribution -11.70
Covariance contribution 1.56
Combinations/Pair 1.20
Mean z-score -2.14
Structure conservation index 0.47
SVM decision value 1.27
SVM RNA-class probability 0.938159
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12089989 98 + 23771897
CAAACCAAUAAACAGUGUUCAAAAACUUCACUAACUGCAACAAUCGAUAUUACUGCACAUCUAUCGACUCUUGUUGCAUCUCUAGGACAACAGGAAC-------A
...............(((((.......((.(((..((((((((((((((............))))))...))))))))....)))))......))))-------) ( -18.02)
>DroSec_CAF1 47220 95 + 1
CAAACCAAUAACCAGUGUUUAGAAACUUCCCUAA-UGCAACAAUCGAUAGUAUUGCACAGCUAUCGACUCUUGUUGCAUCUCUAGU--CACGGCAAC-------A
..............(((.(((((..........(-((((((((((((((((........))))))))...))))))))).))))).--)))(....)-------. ( -25.50)
>DroSim_CAF1 49605 96 + 1
CAAACCAAUAACCAGUGUUUAGAAACUUCCCUUAUUACAACAAUCGAUAGUACUGCACAGCUAUCGACUCUUGUUGCAUCUCUAGU--CACGGCAAC-------A
..............(((.(((((..............((((((((((((((........))))))))...))))))....))))).--)))(....)-------. ( -19.07)
>DroEre_CAF1 49994 103 + 1
CACGCCGCUAGCCAGUGCUGAGAAGUUUCCCCUACAGCGACCAUCGAUAGUACUGCAGAACUAUCAGUUAUUCUUGCACCUCUAGU--GACGACAACAAACGUGA
..((.((((((...((((.((((((((........))).......((((((.(....).)))))).....)))))))))..)))))--).))............. ( -24.30)
>DroYak_CAF1 48774 102 + 1
CAAGACGAUAGCCAGUGUUGAGAAAUG-CCCCCGCAGCAACCAUCGAUAGUACUGCACAGCUAUCGAUUCUUAGUACACCUCUAGU--GACGACAACAAACGUGA
.((((((((((((((((((((....((-(.......)))....)))))...))))....)))))))..)))).((.(((.....))--))).............. ( -20.80)
>consensus
CAAACCAAUAACCAGUGUUGAGAAACUUCCCUAACUGCAACAAUCGAUAGUACUGCACAGCUAUCGACUCUUGUUGCAUCUCUAGU__CACGGCAAC_______A
....................................(((((((((((((((........))))))))...)))))))............................ (-10.14 = -11.70 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:15 2006