| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,079,637 – 12,079,746 |
| Length | 109 |
| Max. P | 0.875937 |
| Location | 12,079,637 – 12,079,746 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.91 |
| Mean single sequence MFE | -32.66 |
| Consensus MFE | -19.14 |
| Energy contribution | -20.06 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12079637 109 - 23771897 CGCUGUUCCAAAUGCUCUUCUAGCUCCAAGCCAUUGGCCAUGGAUAUGGAUGAGUAUAUGGGCUCACAGGAGGCAUUCAGGCUCACCUCCAUGUAGAUGUGUGCAUUGC----------- .((....(((.((((((.((((..((((.(((...)))..))))..)))).)))))).)))((.((((....((((..(((....)))..))))...)))).))...))----------- ( -36.30) >DroSec_CAF1 37190 100 - 1 CGCUGUUCCAAAUGCUCUUCUAGCUUCAAGUCAUUGGCCAUGGAUAUGAAUGAGUAUAUAGGCUC---------AUUUAAACUCACAUUCAUGUGGAUGUGUGCUUUGG----------- .......(((((.((...((((...((((....))))...))))..(((((((((......))))---------)))))....(((((((....))))))).)))))))----------- ( -25.10) >DroSim_CAF1 38956 109 - 1 CGCUGUUCCAAAUGCUCUUCUAGCUCCAAGUCAUUGGCCAUGGAUAUGGAUGAGUAUAUGGGCUCACAGGAGGCAUUUAAACUCACAUCCAUGUGGAUGUGUGCCUUGG----------- ..((((((((.((((((.((((..((((.((.....))..))))..)))).)))))).))))...))))((((((........(((((((....)))))))))))))..----------- ( -40.70) >DroEre_CAF1 39691 96 - 1 CGCUGUUCCAAAUGCUCUUCUAGCUCCAAGUCAUUGGCCAUGGAUAUGGAUGAGUAUACUGGCUCAUG-GGGGCAUUUCGACUCACAUCGAAAUCCA----------------------- (.(((..(((.((((((.((((..((((.((.....))..))))..)))).))))))..)))..)).)-.)((.(((((((......))))))))).----------------------- ( -28.00) >DroYak_CAF1 37985 112 - 1 CGCUGUUCCAAAUGCUCUUCUAGCUCCAAGUCAUUGGCCAUGGAUAUGGAUGAGUAUACUGGU--------AUCAUUUCGACUCACAUCCAGGUGGAUGUGUGUUUUUAUCUGAGCCAAA ...........((((((.((((..((((.((.....))..))))..)))).))))))..((((--------.(((....(((.(((((((....))))))).)))......))))))).. ( -33.20) >consensus CGCUGUUCCAAAUGCUCUUCUAGCUCCAAGUCAUUGGCCAUGGAUAUGGAUGAGUAUAUGGGCUCA___G_GGCAUUUAGACUCACAUCCAUGUGGAUGUGUGCUUUGG___________ .......((..((((((.((((..((((.((.....))..))))..)))).))))))...)).....................(((((((....)))))))................... (-19.14 = -20.06 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:11 2006