Locus 4131

Sequence ID 3L_DroMel_CAF1
Location 12,074,995 – 12,075,091
Length 96
Max. P 0.551998
window6419

overview

Window 9

Location 12,074,995 – 12,075,091
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 92.49
Mean single sequence MFE -23.08
Consensus MFE -18.89
Energy contribution -18.78
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value 0.04
SVM RNA-class probability 0.551998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12074995 96 - 23771897
---GGCUCAUCUCAAAUUUUAUCCUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUUCGCUUGACGCCUUCCCAAGCAGGGCUUAAAAAAUA--
---(((((...................(((((((((((..(....)..)).))))))))).....(((((.........))))).))))).........-- ( -20.30)
>DroSec_CAF1 32764 96 - 1
---GGCUCAUCUCAAAUUUUAUCCUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUUCGCUUGACGCCUACCCAAGCCGGGCUUAAAAAAUA--
---.............(((((..(((((((((..(((..((((((...((...............)))))))).)))..)))))))))..)))))....-- ( -22.26)
>DroSim_CAF1 33793 96 - 1
---GGCUCAUCUCAAAUUUUAUCCUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUUCGCUUGACGCCUACCCAAGCCGGGCUUAAAAAAUA--
---.............(((((..(((((((((..(((..((((((...((...............)))))))).)))..)))))))))..)))))....-- ( -22.26)
>DroEre_CAF1 35296 96 - 1
---GGCUCAUCUCAAAUUUUAUCCUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUUCGCUUGACGCCUUUGCAGGCCGGGCUUAAAGAAUA--
---.............(((((..((((((((((..(((..(((((...((...............))))))))))...))))))))))..)))))....-- ( -23.76)
>DroYak_CAF1 33465 96 - 1
---GGCUCAUCUCAAAUUUUAUACUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUGUGCUUGACGCCUUUGCAAGCCGGGCUUAAAUAAUA--
---..............((((..((((((((((..(((..(((((..(((((.........))))).))))))))...))))))))))..)))).....-- ( -27.20)
>DroAna_CAF1 31749 101 - 1
UGGAGCUCAUCUCAAAUUUUUUCCUCGGUUUGUUUGGUCUGUCAACUCGAAUAAACAAACAAUUCGCUUGACGCCUUGCCAAGCUGGGCUUAAAAAAAAAU
..(((((((....(((((........)))))(((((((.((((((..(((((.........))))).))))))....)))))))))))))).......... ( -22.70)
>consensus
___GGCUCAUCUCAAAUUUUAUCCUCGGUUUGUUUGGUCUGUCAACUCGCAUAAACAAACAAUUCGCUUGACGCCUUCCCAAGCCGGGCUUAAAAAAUA__
...(((((...................(((((((((((..(....)..)).))))))))).....(((((.........))))).)))))........... (-18.89 = -18.78 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:08 2006