Locus 4130

Sequence ID 3L_DroMel_CAF1
Location 12,073,901 – 12,074,005
Length 104
Max. P 0.963214
window6418

overview

Window 8

Location 12,073,901 – 12,074,005
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -21.04
Consensus MFE -19.03
Energy contribution -19.23
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.90
SVM decision value 1.55
SVM RNA-class probability 0.963214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12073901 104 + 23771897
ACUAUCCCCUUGUUUUUUUCAGUACUCUAUCCUGUUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUUUUUCAAGCCCCUCAUCUUUCAGUUCGGGCUCAU
......(((..............((...((((....))))...))((((((......(((((..................))))).....)))))))))..... ( -21.47)
>DroSec_CAF1 31684 104 + 1
ACCUUACCCUUGUUUUUUUCAGUAAUUCAUCCUGUUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUUUUGCAAGCCCCUCAUCUUUCAGUUCGGCCUCAU
.((..................((((((((......))))))))..((((((......(((((..................))))).....))))))))...... ( -19.67)
>DroSim_CAF1 32654 104 + 1
ACCAUACCCUUGUUUUUUUCAGUAAUUCAUCCUGUUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUUUUGCAAGCCCCUCAUCUUUCAGUUCGGGCUCAU
......(((............((((((((......))))))))..((((((......(((((..................))))).....)))))))))..... ( -22.97)
>DroEre_CAF1 34252 101 + 1
ACUACCCCCUUGUUUUUUUCAGUAUGCCAUCCU-UUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUU-U-UAAGCCCCUCAUCUUUCAGUUCGGGCUCAU
......(((............(((..(((....-.)))..)))..((((((......(((((.........-.-......))))).....)))))))))..... ( -19.69)
>DroYak_CAF1 32286 102 + 1
ACUAAACCCUGGUUUCUUUCAGUAUGCCAUCCU-UUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUUCU-UAAGCCCCUCAUCUUUCAGUUCGGGCUCAU
........((((......))))...(((((((.-..))))....(((((((......(((((.....(((...-.)))..))))).....)))))))))).... ( -21.40)
>consensus
ACUAUACCCUUGUUUUUUUCAGUAAUCCAUCCUGUUGGAUUAUGUGGACUGUCCCCUUGAGGAAUCCCUUUUU_CAAGCCCCUCAUCUUUCAGUUCGGGCUCAU
......(((...................((((....)))).....((((((......(((((..................))))).....)))))))))..... (-19.03 = -19.23 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:07 2006