| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,199,739 – 1,199,849 |
| Length | 110 |
| Max. P | 0.934483 |
| Location | 1,199,739 – 1,199,849 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.20 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.74 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.31 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1199739 110 + 23771897 GCAGGCCAACUGCGACGCUAGACGC--UAGUGACACUAUCUGGCCCGGUACCAGGUUUGAGCCACUUUCG-GCAUCAAUUACCAGCCACAAG------CUCGGCUCACAA-AUUAUAAAC ((((.....))))((.(((.((.((--(.(((.(...((((((.......))))))(((((((......)-)).))))......).))).))------))))))))....-......... ( -30.40) >DroSec_CAF1 16456 112 + 1 GCAGCCCAACUGCGACGCUAGACGC--UAGUGACAAUACUUGGCCCGGUCCCAGGUUUGAGCCACUUUCGGGCAUCAAUUACCAGCCACAAG------CUCGGCGCACAAAAUUAUAAAC ((((.....))))(.((((.((.((--(.(((.((.....))((((((.....(((....)))....)))))).............))).))------)))))))).............. ( -30.20) >DroAna_CAF1 28876 98 + 1 GCAGACGAACUGCGACGGUAAACUCCGUAGUGACACU----------------G----GUGCUACUUUCG-GCAUCAAUUACCUGCCACAAAUUUAAAUUCAGCUCACAA-AUUACAAAC ((((.....)))).((((......)))).((((...(----------------(----(((((......)-)))))).......((................))))))..-......... ( -19.99) >DroEre_CAF1 14240 108 + 1 GCAGCCCAGCUGCGACGCCAGAC----CAGAGACACCACUUGGCCCGGUCUCUGGUUUGAGCCACUUUCG-GCAUCAAUUACCAGUCACAAG------CUGGGCUCACAA-AUUACGAGC (.((((((((((.(((..(((((----(((((((.((....))....)))))))))))).(((......)-))...........))).).))------))))))))....-......... ( -48.90) >DroYak_CAF1 16230 94 + 1 GCAGGCCAACUGCGA------------------CACUACUUGGCCUGGUCGCUGCUUUGAGCCACUUUCG-GCAUCAAUUACCAGUCACAAG------CUCGGCUCACAA-AUUAUAAAC .((((((((.((...------------------...)).))))))))((.((((..(((((((......)-)).))))....)))).))...------............-......... ( -25.20) >consensus GCAGCCCAACUGCGACGCUAGAC_C__UAGUGACACUACUUGGCCCGGUCCCAGGUUUGAGCCACUUUCG_GCAUCAAUUACCAGCCACAAG______CUCGGCUCACAA_AUUAUAAAC ((((.....)))).............................................(((((......................................))))).............. ( -9.66 = -9.74 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:18 2006