Locus 4129

Sequence ID 3L_DroMel_CAF1
Location 12,066,037 – 12,066,146
Length 109
Max. P 0.740715
window6417

overview

Window 7

Location 12,066,037 – 12,066,146
Length 109
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -21.40
Consensus MFE -9.48
Energy contribution -10.08
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -2.24
Structure conservation index 0.44
SVM decision value 0.45
SVM RNA-class probability 0.740715
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12066037 109 - 23771897
UGAGCUAAUAUGAGCUUAAUUAAUUCCACAACACGGCUCGGCUUACAGGAAAAUGAUUUCCAUUUAGCAACGUAAGCAA-----UGCAAAUGUAGAAUUUCAAUGAAUCUGAAU
((((((......))))))...(((((.(((.....((...((((((.(((((....))))).....(...)))))))..-----.))...))).)))))............... ( -21.60)
>DroSec_CAF1 23942 89 - 1
UGAGCUAAUAUGAGCUUAAUUAAUUCCAGCACACG-----GCUUACAGUAAAAUGAUUUCCAUUUA---ACGUAAGCAA-----UGCAAAU----AAUUG--------CUGAAU
((((((......))))))........(((((((..-----((((((.((.(((((.....))))).---))))))))..-----)).....----...))--------)))... ( -22.50)
>DroSim_CAF1 24883 89 - 1
UGAGCUAAUAUGAGCUUAAUUAAUUCCACAACACG-----GCUUACAGGAAAUUGAUUUCCAUUUA---ACGUAAGCAA-----UGCAAAU----AAUUG--------CUGAAU
((((((......))))))....((((.........-----((((((.(((((....))))).....---..))))))..-----.((((..----..)))--------).)))) ( -16.60)
>DroEre_CAF1 26391 103 - 1
----CUAAUAUGAGCUUAAUUAAUUCUACAACAUG-----GCUUAUAGGAAAACGAUUUCCAUUAAGUAACGUAGGCAAUGCAAUGCAAAUGUAGAAUUUCAAUUA--CGGAAU
----..........(.((((((((((((((((...-----(((((..(((((....)))))..)))))...))..(((......)))...)))))))))..)))))--.).... ( -20.10)
>DroYak_CAF1 24159 102 - 1
UGAGCUAAUAUGAGCUUAAUUAAUUCUACAACAUG-----GCUUAUAGGAAAAUGAUUUCCAUUAAGCUACGUAAGCAA-----UGCAAAUGUGGAAUUUCAAUUA--CUGAAU
((((((......))))))...(((((((((((.((-----(((((..(((((....)))))..))))))).))..((..-----.))...))))))))).......--...... ( -26.20)
>consensus
UGAGCUAAUAUGAGCUUAAUUAAUUCCACAACACG_____GCUUACAGGAAAAUGAUUUCCAUUUAG__ACGUAAGCAA_____UGCAAAUGU_GAAUUUCAAU_A__CUGAAU
((((((......))))))......................((((((.(((((....)))))..........))))))..................................... ( -9.48 = -10.08 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:06 2006