Locus 4128

Sequence ID 3L_DroMel_CAF1
Location 12,062,685 – 12,062,793
Length 108
Max. P 0.696065
window6416

overview

Window 6

Location 12,062,685 – 12,062,793
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.19
Mean single sequence MFE -34.42
Consensus MFE -15.18
Energy contribution -15.60
Covariance contribution 0.42
Combinations/Pair 1.39
Mean z-score -2.00
Structure conservation index 0.44
SVM decision value 0.34
SVM RNA-class probability 0.696065
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12062685 108 + 23771897
CAACGAGGUGAUCAACUACGUUGAGGAGCAGCAUGCUCGGCACCGCGAGUUGACCAAGCAGAAGAAAACUCUGAAGAAGUGCAUCAAAAAGCUGCAGGGCAUGCUGAA
(((((.(((.....))).))))).....((((((((((.(((..((...((((.((..((((.......))))......))..))))...))))).)))))))))).. ( -36.50)
>DroSec_CAF1 20616 108 + 1
CAACGAGGUCAUCAACUACGUUGAGGAGCAGCAUGCCCGGCACCGCGACUUGACCAAGCAGAAGAAGAGUCUGAAGAAGUGCAUCAAAAAGGUGCAGGGCAUGCUGAA
(((((.(((.....))).))))).....((((((((((.(((((..(((((...(........)..)))))(((.(.....).)))....))))).)))))))))).. ( -41.60)
>DroSim_CAF1 21301 108 + 1
CAACGAGGUCAUCAACUACGUUGAGGAGCAGCACGCCCGGCACCGCGAGUUGACCAAGCAGAAGAAGAGCCUGAAGAAGUGCAUCAAAAAGGUGCAGGGCAUGCUGAA
(((((.(((.....))).))))).....(((((.((((.(((((((...........)).......((((((.....)).)).)).....))))).)))).))))).. ( -38.70)
>DroEre_CAF1 23217 108 + 1
CGAUGAGGUCUUCAACUACCUGGAGGAGCAGCGCGCCCGGGAGCGGGAACUGAUCAUCGAGAAGAAGGUACUCAAGGAGCGCAUCAAAAAGGUGCAGGACAUCCUGAA
.((((.(.((((..(.(((((....((.(((....((((....))))..))).)).((.....))))))).)..)))).).)))).........((((....)))).. ( -31.50)
>DroYak_CAF1 20672 108 + 1
CGAUGAGGUCAUCAACUACGUGGAGGAGCAGCGAGUUCGACAGCGGGAAUUUGUCAACGAGAAGGAGUUGCUCAAGGAGCGCAUCAAGAAGGCGCAGGAUAUGCUGAA
.((((....))))...............(((((.((((((((((.....((((....)))).....)))).)).....((((.........)))).)))).))))).. ( -25.80)
>DroAna_CAF1 19172 108 + 1
CGAGGAGGUGAUGGACUACUUGCUGGAACAGAAGGUGCGCGAGCGCGAACUAUCAUUGGAGAAGGAGCUUCUUAAGGAGCGCCUGUGCAAGAUGGAGGAGCAACUAAA
(.((.(((((......))))).)).)........((((....))))...(((((.(((.(..(((.(((((....))))).))).).))))))))............. ( -32.40)
>consensus
CAACGAGGUCAUCAACUACGUGGAGGAGCAGCACGCCCGGCACCGCGAAUUGACCAAGCAGAAGAAGAUUCUGAAGAAGCGCAUCAAAAAGGUGCAGGACAUGCUGAA
..(((.(((.....))).))).......(((((.((((....................(((.........))).......(((((.....))))).)))).))))).. (-15.18 = -15.60 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006