Locus 4127

Sequence ID 3L_DroMel_CAF1
Location 12,053,761 – 12,053,863
Length 102
Max. P 0.618484
window6415

overview

Window 5

Location 12,053,761 – 12,053,863
Length 102
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 91.08
Mean single sequence MFE -21.82
Consensus MFE -16.51
Energy contribution -16.11
Covariance contribution -0.40
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.76
SVM decision value 0.17
SVM RNA-class probability 0.618484
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12053761 102 + 23771897
UUGG-----GGUUUUGACGCAACAGGAAAAAUAAAAACAGUCAUAAUGACUAGGUACACGGCUUAGCCGUGACUCAAUUGGCCGGAAACAAAAUCUAUAAUAACU--AA----
...(-----(((((((...(....((..((........((((.....)))).(((.((((((...)))))))))...))..)).)...)))))))).........--..---- ( -22.80)
>DroSec_CAF1 11695 104 + 1
UUGG-----GGUUUUGACGCAACAGGAAAAAUAAAAACAGUCAUAAUGACUAGGUAGUCGGCUUAACCGUGACUCAAUUGGCCGGAAACAAAAUCUAUAAUAACUAUAA----
...(-----(((((((......................((((.....))))......((((((................))))))...)))))))).............---- ( -17.79)
>DroSim_CAF1 12373 104 + 1
UUGG-----GGUUUUGACGCAACAGGAAAAAUAAAAACAGUCAUAAUGACUAGGUAGUCGGCUUAACCGUGACUCAAUUGGCCGGAAACAAAAUCUAUAAUAACUAUAA----
...(-----(((((((......................((((.....))))......((((((................))))))...)))))))).............---- ( -17.79)
>DroEre_CAF1 14047 109 + 1
UUAAUCUUGGAUUUUGACGCAACCGGAAAAGUAAAAACAGUCAUAAUGACUAGGUACACGGCUUAACCGUGACUCAAUUGGCCGGAAACAAAAUCUAUAAUAACUAUAA----
...((..(((((((((......((((..((........((((.....)))).(((.(((((.....))))))))...))..))))...)))))))))..))........---- ( -25.80)
>DroYak_CAF1 11585 108 + 1
UUAA-----GAUUUUGACGCAACCGGAAAAAUAGAAACAGUCAUAAUGACUAGGUACACGGCUUAACCGUGACUCAAUUGGCCGGAAACGAAAUCUAUAAUAACUAUAAUAAC
...(-----(((((((......((((...(((.((...((((.....))))..((.(((((.....))))))))).)))..))))...))))))))................. ( -24.90)
>consensus
UUGG_____GGUUUUGACGCAACAGGAAAAAUAAAAACAGUCAUAAUGACUAGGUACACGGCUUAACCGUGACUCAAUUGGCCGGAAACAAAAUCUAUAAUAACUAUAA____
.........(((((((......................((((.....)))).......(((((................)))))....))))))).................. (-16.51 = -16.11 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:04 2006