Locus 4125

Sequence ID 3L_DroMel_CAF1
Location 12,038,911 – 12,039,001
Length 90
Max. P 0.995521
window6413

overview

Window 3

Location 12,038,911 – 12,039,001
Length 90
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -27.52
Consensus MFE -25.22
Energy contribution -25.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.92
SVM decision value 2.59
SVM RNA-class probability 0.995521
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12038911 90 + 23771897
CGCCCUCGGCAACAGGAGGAU---AUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCAU-------UCGGAUGUACGUGUAUCUGCCCCAAUGCUAAC
.(((((((....)..))))..---...........((((((((...(.((((((((.....-------.)))))))))..))))))))......)).... ( -29.30)
>DroSec_CAF1 56429 93 + 1
CGCCCUCUGCAACAGGAGGAUACUAUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCAU-------UCGGAUGUACGUGUAUCUGCCCCAAUGCUAAC
.(((((((......)))))................((((((((...(.((((((((.....-------.)))))))))..))))))))......)).... ( -30.30)
>DroSim_CAF1 56231 93 + 1
CGCCCUCGGCAACAGGAGGAUACUAUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCAU-------UCGGAUGUACGUGUAUCUCCCCCAAUGCUAAC
.......((((...((.(((.......(((.....)))(((((...(.((((((((.....-------.)))))))))..))))))))))...))))... ( -26.60)
>DroEre_CAF1 58739 90 + 1
CGCCCUCGGCAACAGGAGGAU---AUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCCU-------UCAGAUGUACGUGUAUCUGCCCCAAUGCUAAC
.((....(((.....(((.((---...(((.....))).)).)))(((((((..(((((..-------......))))))))))))))).....)).... ( -23.20)
>DroYak_CAF1 57631 97 + 1
CGCCCUCGGCAACAGGAGGAU---AUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCCUUCUGUCUUCGGAUGUACGUGUAUCUGCCCCAAUGCUAAC
.(((((((....)..))))..---...........((((((((...(.((((((((.((.....))...)))))))))..))))))))......)).... ( -28.20)
>consensus
CGCCCUCGGCAACAGGAGGAU___AUAUACUAUGCGUAGAUGCUCAGAUACAUCCGUGCAU_______UCGGAUGUACGUGUAUCUGCCCCAAUGCUAAC
.((((((........))))................((((((((...(.((((((((.............)))))))))..))))))))......)).... (-25.22 = -25.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:02 2006