Locus 4124

Sequence ID 3L_DroMel_CAF1
Location 12,036,037 – 12,036,152
Length 115
Max. P 0.589752
window6412

overview

Window 2

Location 12,036,037 – 12,036,152
Length 115
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.97
Mean single sequence MFE -32.55
Consensus MFE -17.57
Energy contribution -16.93
Covariance contribution -0.63
Combinations/Pair 1.24
Mean z-score -1.96
Structure conservation index 0.54
SVM decision value 0.11
SVM RNA-class probability 0.589752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12036037 115 - 23771897
UAAAAUCAAGACAGCCCCAAAAUUACAUAUGUCAAAUUAUGUUUAAUGUGCGGCAUUAGUCAGGUACAGUGGUGUUUAGA--GAAGCUACUGG-UGCUCGUAAAU-GGGGAGAAAUGCA
..............(((((...((((.............((.((((((.....)))))).))(((((((((((.((....--)).)))))).)-)))).)))).)-))))......... ( -25.70)
>DroPse_CAF1 51493 108 - 1
UAAUGUCAAGUCAGCCCUCAAAUUACAUAUGUCAAAUUAUGUUGAAUGUGGAGCAUUCCCCAGGUACAGUUGUGCCUGGAUGGAAGCUGCA-GCCGCUGAUCA-----GGAUCA-----
....(((..((((((((.((....(((((........)))))....)).))(((.((((((((((((....))))))))..)))))))...-...))))))..-----.)))..----- ( -36.80)
>DroSim_CAF1 53130 115 - 1
UAAAAUCAAGACAGCCCCAAAAUUACAUAUGUCAAAUUAUGUUUAAUGUGCGGCAUUAGUCAGGUACAGUGGUGUUUGGA--GAAGCUACU-G-UGCUCGUAAAUUGGGGGGAGCUGCA
.........(.(((((((......(((((........)))))(((((.((((((....))).(((((((((((.((....--)).))))))-)-)))).))).))))).))).))))). ( -33.70)
>DroEre_CAF1 55885 112 - 1
UAAAGUCAA-ACAGCCCCAAAAUUACAUAUUUCAAAUUAUGUUUAAUGUGCGGCAUUAGUCGGGUACAGUGGUGUUUGGA--GAAGCUACU-G-UGCUCGUAAAU-GGGG-GAGCUCCA
.........-....(((((.....(((((........)))))((((((.....)))))).(((((((((((((.((....--)).))))))-)-))))))....)-))))-........ ( -33.00)
>DroYak_CAF1 54756 113 - 1
UAAAGUCAA-ACAGCCCCAAAAUUACAUGUUUCAAAUUAUGUUUAAUGUGCGGCAUUAGUCGGGUACAGUGGUGUUUGGA--GAAGCUACC-G-UGCUCGUAAAU-GGGGAGAGCUCCG
.........-....(((((...((((((((..((.((((....)))).))..)))).....((((((.(((((.((....--)).))))).-)-))))))))).)-))))......... ( -29.00)
>DroPer_CAF1 48396 108 - 1
UAAUGUCAAGUCAGCCCUCAAAUUACAUAUGUCAAAUUAUGUUGAAUGUGGAGCAUUCUCCAGGUACAGUUGUGCCUGGAUGGAAGCUGCA-GCCGCUGAUCA-----GGAUCA-----
....(((..((((((((.((....(((((........)))))....)).))(((.((((((((((((....))))))))).))).)))...-...))))))..-----.)))..----- ( -37.10)
>consensus
UAAAGUCAAGACAGCCCCAAAAUUACAUAUGUCAAAUUAUGUUUAAUGUGCGGCAUUAGUCAGGUACAGUGGUGUUUGGA__GAAGCUACU_G_UGCUCGUAAAU_GGGGAGAACU_CA
..............((((......(((((........))))).(((((.....))))).((((((((....)))))))).....(((........)))........))))......... (-17.57 = -16.93 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:01 2006