| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,031,495 – 12,031,602 |
| Length | 107 |
| Max. P | 0.725631 |
| Location | 12,031,495 – 12,031,602 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 68.79 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -4.19 |
| Energy contribution | -7.33 |
| Covariance contribution | 3.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.16 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12031495 107 + 23771897 AG-GUAUUGUUGCAAUGCUCCCAACAUCAUCAGCAAUAUCAGCUUGGUAAUCAGCAAUUCUGGUAGCUUUCGAGCCCAUUAGCAAUCACGCUGCUGUUGCCCAAGCC-A .(-(((((((((..(((.......)))...)))))))))).(((((((((.((((.....(((..(((....))))))..(((......)))))))))).)))))).-. ( -32.50) >DroPse_CAF1 47509 85 + 1 AGAACAGAGUUCUA---------UUU---UCACCACAAUCACC---AUCAACACCAUUUCUGUUAGCUUUCCAGUCAAAUGGGAA---------GGUUACCCAAGUUUU ..(((((((.....---------...---..............---...........)))))))..(((((((......))))))---------).............. ( -12.61) >DroSec_CAF1 49253 98 + 1 AG-GUAUUGUUGCA---------ACUUCAUCAGCAAUAUCAGCUUGGUAAUCAGCAAUUCUGGUAGCUUUCGUGCCCAUUAGCAAUCACGCUGCUGUUGCCCAAGCC-G .(-(((((((((..---------.......)))))))))).((((((......(((((...((((((.....(((......))).....))))))))))))))))).-. ( -31.60) >DroSim_CAF1 48812 98 + 1 AG-GUAUUGUUGCA---------ACUUCAUCAGCAAUAUCAGCUUGGUAAUCAGCAAUUCUGGUAGCUUUCGAGCCCAUUACCAAUCACGCUGCUGUUGCCCAAGCC-A .(-(((((((((..---------.......)))))))))).(((((((((.(((((....((((((((....)))....))))).......)))))))).)))))).-. ( -30.70) >DroYak_CAF1 50213 107 + 1 AA-GUAUUGUUGCAAUGCAACAAGCUUCAUCAGCAGUAUCAGCUUGCUAAUCAGCAAUUCUGGUAGCUCUCGAGCCCAUUAGCAAUCACGCUGCUGUUGCCCAAGCC-A ..-...(((((((...)))))))((((((.((((((((((((.(((((....)))))..))))).(((....)))..............))))))).))...)))).-. ( -31.30) >DroPer_CAF1 44452 85 + 1 AGAACAGAAUUCUA---------UUU---UCACCACAAUCACC---AUCAACACCAUUUCUGGUAGCUUUCCAGUCAAAUGCGAA---------GGUUACCCAAGUUUU (((((.(((.....---------..)---))............---...............((((((((((((......)).)))---------)))))))...))))) ( -16.20) >consensus AG_GUAUUGUUGCA_________ACUUCAUCAGCAAUAUCAGCUUGGUAAUCAGCAAUUCUGGUAGCUUUCGAGCCCAUUAGCAAUCACGCUGCUGUUGCCCAAGCC_A ................................((((((.((((......(((((.....))))).(((....)))..............)))).))))))......... ( -4.19 = -7.33 + 3.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:00 2006