Locus 4122

Sequence ID 3L_DroMel_CAF1
Location 12,030,653 – 12,030,759
Length 106
Max. P 0.970583
window6410

overview

Window 0

Location 12,030,653 – 12,030,759
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 76.10
Mean single sequence MFE -16.37
Consensus MFE -8.08
Energy contribution -8.20
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -2.30
Structure conservation index 0.49
SVM decision value 1.66
SVM RNA-class probability 0.970583
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12030653 106 - 23771897
UAACACUUUAUAGAAUCCAAAUCUACACCCCUUAGGCAGA-UUUCCAUUACAAUCGAUAUACCCUAAUCUCCACACUUAAGGGGUACGAAAAACAAAUACAAAUCCA
..........((((.......)))).((((((((((..((-((........))))(((........)))......))))))))))...................... ( -17.10)
>DroSec_CAF1 48483 107 - 1
UUACUCUUUAUAGAAUCCAAAUUUGCAUCCCUUAAGCAAUCGAUCCAUUAGAAUCGAUAUACCCUUUUCUCCACUUUUAAGGGGUACGAAAAACAAAUACAAAUCCA
....(((....))).......((((.((((((((((..((((((.(....).)))))).................)))))))))).))))................. ( -15.11)
>DroSim_CAF1 47618 107 - 1
UUACACUUUAUAGAAUCCAAAUCUGCAUCCCUUAAGCAAUCGUUCCAUUAGAAUCGAUAUACCCUUUUCUCCACAUUUAAGGGGUACGAAAAACAAAUACAAAUCCA
.......................(((.........)))(((((((.....))).)))).((((((((...........))))))))..................... ( -12.70)
>DroEre_CAF1 50712 106 - 1
UUACACUUUAUAGGGUGCAAAUCUGCAUCUCUUAUGCAGA-CUACCAUUACACGCGGUAUACCCUUUUCUCCACAAUUAGGGGGUACGAAAAGCAAAUACAAAUCCG
.....((((..((((((....(((((((.....)))))))-.((((.........))))))))))..(((((.......))))).....)))).............. ( -22.40)
>DroYak_CAF1 49374 84 - 1
UAUCACU----------------------UCUUAUCGAGA-CUUCCUUUACAUGCCAUAUACCCCUUUCUCCACAACUAAGGGGUACGAAAAACAAAUACAAGUCAA
.......----------------------.........((-(((...............((((((((...........))))))))..............))))).. ( -14.55)
>consensus
UUACACUUUAUAGAAUCCAAAUCUGCAUCCCUUAAGCAGA_CUUCCAUUACAAUCGAUAUACCCUUUUCUCCACAAUUAAGGGGUACGAAAAACAAAUACAAAUCCA
...........................................................((((((((...........))))))))..................... ( -8.08 =  -8.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006