Locus 4120

Sequence ID 3L_DroMel_CAF1
Location 12,023,912 – 12,024,004
Length 92
Max. P 0.597618
window6407

overview

Window 7

Location 12,023,912 – 12,024,004
Length 92
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -20.16
Consensus MFE -18.38
Energy contribution -18.22
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.21
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.597618
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12023912 92 - 23771897
UUCAACUUCAACUAUUUA------------UUUCGGUUUGUU--UUAUUUCGAGCGCCGCGACAAUUUGCCAAGCAAACUUUUUUGCGUUCAGAUAGCGGCGAAAA
..................------------((((.(((((..--......)))))(((((....(((((....(((((....)))))...))))).))))))))). ( -22.60)
>DroSec_CAF1 41890 91 - 1
UUCAACUUCAACUAUUUA------------UUUCGGGUUGUU--UUAUUUCGAGCGCCGCGACAAUUUGCCAAGCAAACUU-UUUGCGUUCAGAUAGCGGCGAAAA
..(((((..((.......------------.))..)))))..--..........((((((....(((((....((((....-.))))...))))).)))))).... ( -20.40)
>DroSim_CAF1 41001 93 - 1
UUCAACUUCAACUAUUUA------------UUUCGGUUUGUUUUUUAUUUCGAGCGCCGCGACAAUUUGCCAAGCAAACUU-UUUGCGUUCAGAUAGCGGCGAAAA
..................------------.(((((..((.....))..)))))((((((....(((((....((((....-.))))...))))).)))))).... ( -20.90)
>DroEre_CAF1 43954 91 - 1
UUCAACUCCAACUAUUUA------------UUUCUUUUUGUU--UCAUUUCGAGCGCCGUGACAAUUUGCCAAGCAAACUU-UUUGCGUUCAGAUAGCGGCGAAAA
..................------------((((.....(((--(......))))(((((....(((((....((((....-.))))...))))).))))))))). ( -17.10)
>DroYak_CAF1 42411 103 - 1
UUCGACUUCAACUAUUUACGAGUAUUUCUUUUUCUUUUUGUU--UUAUUUCGAGCGCCGCGACAAUUUGCCAAGCAAACUU-UUUGCGUUCAGAUAGCGGCGAAAA
(((((....(((.......(((.....))).........)))--.....)))))((((((....(((((....((((....-.))))...))))).)))))).... ( -19.79)
>consensus
UUCAACUUCAACUAUUUA____________UUUCGGUUUGUU__UUAUUUCGAGCGCCGCGACAAUUUGCCAAGCAAACUU_UUUGCGUUCAGAUAGCGGCGAAAA
......................................................((((((....(((((....(((((....)))))...))))).)))))).... (-18.38 = -18.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:56 2006