Locus 412

Sequence ID 3L_DroMel_CAF1
Location 1,196,353 – 1,196,470
Length 117
Max. P 0.653604
window607

overview

Window 7

Location 1,196,353 – 1,196,470
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 87.44
Mean single sequence MFE -35.54
Consensus MFE -24.44
Energy contribution -25.12
Covariance contribution 0.68
Combinations/Pair 1.20
Mean z-score -2.03
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.653604
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1196353 117 - 23771897
CCACAGUAAACUGAUGGAGAGGUCCUCGCAAUGGGCCCUUAUAUACCCUGAACCAUCACCUUAUUAAGAAGAACGUAUAAGUACUCAACCGUGAUAAGGUGAUCACCAUAUUGCGGC
((.(((((...(((..(((.(((((.......))))))))...............(((((((((((...((.((......)).))......))))))))))))))...))))).)). ( -30.50)
>DroSec_CAF1 13108 117 - 1
CCACAGUAAACUGAUGAAGAGGUCCUCGCAAUGGGCCCUUAUAUACCCUGAAUCAGCACCUUAUUAGGGAGAACGUAUAAGUACUCAACCGUGAUAAGGUGGUCACCAUAUUGCGGC
((.(((((..(((((.(((.(((((.......))))))))...........)))))(((((((((((((((.((......)).)))..)).)))))))))).......))))).)). ( -36.40)
>DroSim_CAF1 9530 117 - 1
CCACAGUAAACUGAUGAAGAGGUCCUCGCAAUGGGCCCUUAUAUACCCUGAAUCAGCACCUUAUUAGGGAGAACGUAUAAGUACUCAACCGUGAUAAGGUGAUCACCAUAUUGCGGC
((.(((((..(((((.(((.(((((.......))))))))...........)))))(((((((((((((((.((......)).)))..)).)))))))))).......))))).)). ( -36.20)
>DroEre_CAF1 10809 117 - 1
CCAGAGUAAACUGAUGGAUAGGUGCUCGCAAUGAGCACUUAUAUACCCUGAACAGGCACUUUAUUAGGGGGAACGUAGGAGUACUGAGUGGCGAUAAGGUGAUCACCAUAUUGCGGC
....((((..((.(((.((((((((((.....))))))))))...((((((............))))))....))).))..))))..((.((((((.(((....))).)))))).)) ( -37.70)
>DroYak_CAF1 12627 117 - 1
CCAAAGUAAACUGAUGGAGAAGUCCUCGCAAUGGGCGCUUUUAUACCCUCAGCAAGCACUUUAUUAGGGGGAACGUAGAAGUGCCGAGUUGUGAUAAGGUGAUCAGCAUAUGGCGGC
((...(((..((((((((....)))(((((((.(((((((((((.(((((................)))))...)))))))))))..))))))).......)))))..)))...)). ( -36.89)
>consensus
CCACAGUAAACUGAUGGAGAGGUCCUCGCAAUGGGCCCUUAUAUACCCUGAACCAGCACCUUAUUAGGGAGAACGUAUAAGUACUCAACCGUGAUAAGGUGAUCACCAUAUUGCGGC
((.(((((...((((.(((.(((((.......))))))))................((((((((((.((((.((......)).))...)).))))))))))))))...))))).)). (-24.44 = -25.12 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006