| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,001,769 – 12,001,868 |
| Length | 99 |
| Max. P | 0.814338 |
| Location | 12,001,769 – 12,001,868 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.51 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -12.91 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12001769 99 - 23771897 UUACAUGCCCAUGAAAACCGAAAGUUAUGGCCGUACUUAGCCAACUUAGCCAACUGCUGACACGAUUCCAUGGG-C--------CAACUUCCAACUUCCAACU-CCCAU ......(((((((.....(....)...((((........))))..(((((.....)))))........))))))-)--------...................-..... ( -20.90) >DroPse_CAF1 21231 91 - 1 GUACAAGCCCAUGAAAACCGAAAGUUAUGUCCGUCUUUAGCCAA---------GUGCUGACACGUUUCCAUGGGGCUCUAUGUCUGAAUG-CCACUUGC--------CA ...((((.(((((.(((((....)...((((.(((((.....))---------).)).)))).)))).)))))(((.............)-)).)))).--------.. ( -20.32) >DroSec_CAF1 20042 92 - 1 UUACAUGCCCAUGAAAACCGAAAGUUAUGGCCGUACUUAGGCAACUUAGCCGAGUGCUGACACGAUUCCAUGGG-C--------CAACUU-------CCAACU-CCCAU ......(((((((.....(....)(..((.(.((((((.(((......))))))))).).))..)...))))))-)--------......-------......-..... ( -24.80) >DroSim_CAF1 19315 83 - 1 UUACAUGCCCAUGAAAACCGAAAGUUAUGGCCGUACUUAGCCAAC---------UGCUGACACGAUUCCAUGGG-C--------CAACUU-------CCAACU-CCCAU ......(((((((.....((..(((..((((........))))..---------.)))....))....))))))-)--------......-------......-..... ( -18.80) >DroYak_CAF1 19621 85 - 1 UUACAUGCCCAUGAAAAUCGAAAGUUAUGCCCGUACUUAGCCAA---------CUGCUGACACGAUUCCAUGGGUC--------CAACUC-------CCAUCUUACCAU ......(((((((.....(....).......(((..(((((...---------..))))).)))....))))))).--------......-------............ ( -16.60) >DroPer_CAF1 18126 98 - 1 GUACGAGCCCAUGAAAACCGAAAGUUAUGUCCGUCUUUAGCCAA---------GUGCUGACACGUUUCCAUGGGGCUCUAUGCCUGUAUG-CCACUUGCCACU-UGCCA ....(((((((((.(((((....)...((((.(((((.....))---------).)).)))).)))).))).))))))...((..((..(-(.....)).)).-.)).. ( -23.20) >consensus UUACAUGCCCAUGAAAACCGAAAGUUAUGGCCGUACUUAGCCAA_________GUGCUGACACGAUUCCAUGGG_C________CAACUU_______CCAACU_CCCAU .......((((((.....(....).......(((..(((((..............))))).)))....))))))................................... (-12.91 = -13.07 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:46 2006