| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,000,497 – 12,000,592 |
| Length | 95 |
| Max. P | 0.995560 |
| Location | 12,000,497 – 12,000,592 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.46 |
| Mean single sequence MFE | -14.13 |
| Consensus MFE | -13.97 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.58 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.995560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12000497 95 + 23771897 GUCUUCUUUCCCUU-UUCCAUUCUUCUGCGUUGAAGAAAUCAAGCUUUUCUUUUUUC-CCCCCCAACUUCUCCAUUUCUUUGAUGGAGCCUCUUCAU ..............-.....((((((......))))))...................-...........(((((((.....)))))))......... ( -13.90) >DroSec_CAF1 18725 94 + 1 GUCUUCUUUCCCUU-UUCCAUUCUUCUGCGUUGAAGAAAUAAAGCUUUUCUUUU-UU-CCCUCCAACUUCUCCAUUUCUUUGAUGGAGCCUCUUCAU ...........(((-(....((((((......))))))..))))..........-..-...........(((((((.....)))))))......... ( -14.20) >DroYak_CAF1 18269 97 + 1 GACUUCUUUCCCUUUUUCCAUUCUUCUGCGUUGAAGAAAUCAAGCUUUUCUUUUUUCCCCCCCCAACUUCUCCAUUUCUUUGAUGGAGUCUCUUCAU (((.................((((((......))))))................................((((((.....)))))))))....... ( -14.30) >consensus GUCUUCUUUCCCUU_UUCCAUUCUUCUGCGUUGAAGAAAUCAAGCUUUUCUUUUUUC_CCCCCCAACUUCUCCAUUUCUUUGAUGGAGCCUCUUCAU ....................((((((......))))))...............................(((((((.....)))))))......... (-13.97 = -13.97 + 0.00)
| Location | 12,000,497 – 12,000,592 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 94.46 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -15.26 |
| Energy contribution | -15.04 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12000497 95 - 23771897 AUGAAGAGGCUCCAUCAAAGAAAUGGAGAAGUUGGGGGG-GAAAAAAGAAAAGCUUGAUUUCUUCAACGCAGAAGAAUGGAA-AAGGGAAAGAAGAC .........((((((.......))))))..(((((((..-(....(((.....)))..)..)))))))..............-.............. ( -16.70) >DroSec_CAF1 18725 94 - 1 AUGAAGAGGCUCCAUCAAAGAAAUGGAGAAGUUGGAGGG-AA-AAAAGAAAAGCUUUAUUUCUUCAACGCAGAAGAAUGGAA-AAGGGAAAGAAGAC .........((((((.......))))))..(((((((..-(.-.((((.....)))).)..)))))))..............-.............. ( -17.80) >DroYak_CAF1 18269 97 - 1 AUGAAGAGACUCCAUCAAAGAAAUGGAGAAGUUGGGGGGGGAAAAAAGAAAAGCUUGAUUUCUUCAACGCAGAAGAAUGGAAAAAGGGAAAGAAGUC .........((((((.......))))))..(((((((..(.....(((.....)))..)..)))))))............................. ( -17.40) >consensus AUGAAGAGGCUCCAUCAAAGAAAUGGAGAAGUUGGGGGG_GAAAAAAGAAAAGCUUGAUUUCUUCAACGCAGAAGAAUGGAA_AAGGGAAAGAAGAC .((((((((((((((.......))))))(((((..................)))))..))))))))............................... (-15.26 = -15.04 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:45 2006