Locus 4111

Sequence ID 3L_DroMel_CAF1
Location 11,994,855 – 11,994,945
Length 90
Max. P 0.500000
window6394

overview

Window 4

Location 11,994,855 – 11,994,945
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.06
Mean single sequence MFE -22.85
Consensus MFE -13.88
Energy contribution -13.93
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.61
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11994855 90 - 23771897
CAUGGACAUCAGUUGGCUUGUCAGCAGAAAUAUGAGCCACAUUGUCGGUGG-----UACAAGCGGUAAAAGAUGUCUUGCCACAACGCCAAAGCA
..(((......((((((((((((..(....).)))(((((.......))))-----).)))))(((((........))))).)))).)))..... ( -23.70)
>DroSec_CAF1 13155 90 - 1
CAUGGACAUCAGUUGGCUUGUCAGCAGAAAUAUGAGCCACAUUGUCGGAGC-----UACAAGCGGUAAAAGAUGUCUUGCCACAAAGCCAAAGCA
...(((((((..(((((((((.(((.((...(((.....)))..))...))-----)))))))..)))..))))))).........((....)). ( -21.90)
>DroSim_CAF1 12398 90 - 1
CAUGGACAUCAGUUGGCUUGUCAGCAGAAAUAUGAGCCACAUUGUCGGAGG-----UACAAGCGGUAAAAGAUGUCUUGCCACAAAGCCAAAGCA
...(((((((..((((((((((..(.((...(((.....)))..)).)..)-----.))))))..)))..))))))).........((....)). ( -19.40)
>DroEre_CAF1 13180 89 - 1
CAUGGACAUCAGUUGGCUUGUCAGCAGAAAUAUGAGCCACAUUGUCGGAGC-----UACAAGA-GCAAAAGAUGUCUUACCAAAAAGCCACGGCA
...(((((((..(((.(((((.(((.((...(((.....)))..))...))-----)))))).-.)))..))))))).........((....)). ( -24.00)
>DroYak_CAF1 12824 89 - 1
CGUGGACAUCAGUUGACUUGUCAGCAGAAAUAUGAGCCACAUUGUAGGAGCAAGAGUACAAGA-GCAAAAGAUGUCUGGCCAAAAGGCCA-----
...(((((((.(((((....))))).......((..((........))..))...........-......)))))))((((....)))).----- ( -26.20)
>DroAna_CAF1 12990 74 - 1
GGGGGACAUGAGCUGGCUUGUCAGCAGAAAUAUGAGCUACAUUGUCC----------------CUUACAAGAUGUCUUGAAAGAG-----AAGCA
((((((((((((((.(....((....))....).)))).)).)))))----------------)))....(...((((....)))-----)..). ( -21.90)
>consensus
CAUGGACAUCAGUUGGCUUGUCAGCAGAAAUAUGAGCCACAUUGUCGGAGC_____UACAAGCGGUAAAAGAUGUCUUGCCACAAAGCCAAAGCA
...(((((((.(((((....))))).((...(((.....)))..))........................))))))).................. (-13.88 = -13.93 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:44 2006