Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,990,790 – 11,990,897 |
Length | 107 |
Max. P | 0.973163 |
Location | 11,990,790 – 11,990,897 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -25.43 |
Consensus MFE | -20.56 |
Energy contribution | -20.42 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -2.42 |
Structure conservation index | 0.81 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11990790 107 + 23771897 UGGCUGCUUGAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGUAAACCCAGCGGAGGGUCAGCCAAG ((((((..........(((((((((.(((((((((.......))))........))))).)))))))))................((((......)))))))))).. ( -26.20) >DroSec_CAF1 9197 107 + 1 UGGCUGCUUGAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGCAAACCCAGCGGAGGGUCAGCCAUG (((((((((.......(((((((((.(((((((((.......))))........))))).)))))))))...........(((.......)))..))).)))))).. ( -26.60) >DroSim_CAF1 8388 107 + 1 UGGCUGCUUGAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGCAAACCCAGCGGAGGGUCAGCCAAG (((((((((.......(((((((((.(((((((((.......))))........))))).)))))))))...........(((.......)))..))).)))))).. ( -26.80) >DroEre_CAF1 9252 106 + 1 UGGCUGGUUAAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGCAAACCCAGCGGAGGGUCAGC-AAG ..((((..(...((..(((((((((.(((((((((.......))))........))))).)))))))))...........(((.......))))).)..))))-... ( -24.40) >DroYak_CAF1 8693 106 + 1 UGGCUGGUUAAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGCAAACCCAGCGGAGGGUCAGC-AAG ..((((..(...((..(((((((((.(((((((((.......))))........))))).)))))))))...........(((.......))))).)..))))-... ( -24.40) >DroAna_CAF1 8897 105 + 1 UGGCUGGUUAAAUCAAAUGAUAUUUCAACAACAGUUGCCUGUGUUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACAUA-ACCCAGCGGAGGGUCAGC-AAG ..((((..........(((((((((.((((((((....)))((((....)))).))))).)))))))))...............-((((......))))))))-... ( -24.20) >consensus UGGCUGCUUAAAUCAAAUGAUAUUUCAACAACAGUUGCUUGUGCUGAAAAAUAAUUGUUUAAAUGUCAUAAAAUAAACAACGCAAACCCAGCGGAGGGUCAGC_AAG ..((((..........(((((((((.(((((((((.......))))........))))).)))))))))................((((......)))))))).... (-20.56 = -20.42 + -0.14)
Location | 11,990,790 – 11,990,897 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -21.77 |
Energy contribution | -21.63 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -2.43 |
Structure conservation index | 0.86 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11990790 107 - 23771897 CUUGGCUGACCCUCCGCUGGGUUUACGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUCAAGCAGCCA ..((((((((((......))))....((((((((............))))))))....((((((((((......)).))))))))................)))))) ( -25.80) >DroSec_CAF1 9197 107 - 1 CAUGGCUGACCCUCCGCUGGGUUUGCGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUCAAGCAGCCA ..((((((((((......))))).((((((((((............))))))))....((((((((((......)).))))))))...............))))))) ( -26.90) >DroSim_CAF1 8388 107 - 1 CUUGGCUGACCCUCCGCUGGGUUUGCGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUCAAGCAGCCA ..((((((((((......))))).((((((((((............))))))))....((((((((((......)).))))))))...............))))))) ( -26.80) >DroEre_CAF1 9252 106 - 1 CUU-GCUGACCCUCCGCUGGGUUUGCGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUUAACCAGCCA ...-((.(((((......))))).))((((((((............))))))))....((((((((((......)).))))))))...................... ( -22.10) >DroYak_CAF1 8693 106 - 1 CUU-GCUGACCCUCCGCUGGGUUUGCGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUUAACCAGCCA ...-((.(((((......))))).))((((((((............))))))))....((((((((((......)).))))))))...................... ( -22.10) >DroAna_CAF1 8897 105 - 1 CUU-GCUGACCCUCCGCUGGGU-UAUGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAACACAGGCAACUGUUGUUGAAAUAUCAUUUGAUUUAACCAGCCA ...-((((((((......))))-.((((..(.......)..))))((((((((.....(((((((((((....))).))))))))......))).))))).)))).. ( -28.70) >consensus CUU_GCUGACCCUCCGCUGGGUUUGCGUUGUUUAUUUUAUGACAUUUAAACAAUUAUUUUUCAGCACAAGCAACUGUUGUUGAAAUAUCAUUUGAUUCAACCAGCCA ....((((((((......))))....((((((((............))))))))....((((((((((......)).))))))))................)))).. (-21.77 = -21.63 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:43 2006