Locus 4108

Sequence ID 3L_DroMel_CAF1
Location 11,987,700 – 11,987,816
Length 116
Max. P 0.962105
window6389

overview

Window 9

Location 11,987,700 – 11,987,816
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 93.83
Mean single sequence MFE -32.69
Consensus MFE -27.59
Energy contribution -28.83
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.85
Structure conservation index 0.84
SVM decision value 1.54
SVM RNA-class probability 0.962105
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11987700 116 - 23771897
CAAUGGAAAUUUUUCAAAGUGUGCGCACCAAUCCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGAUCGGGUGGUAAUGCUAUCCACUUGAUAAGUCUGACAAUUCCUUGGCAUAG-
(((.((((..........(((....))).....(((((((((((.(((((((...))))))).)))))((((((.....))))))........))))))....)))))))......- ( -35.10)
>DroSec_CAF1 6044 117 - 1
UAAUGGAACUUUUUCAAAGUGUGCCCACCAAUCCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGAUCGGGUGGUAAUGCUAUCCACUUGAUAAGUCUGACAAUUCCUUGGCAUAGG
...((((.....))))...((((((........(((((((((((.(((((((...))))))).)))))((((((.....))))))........))))))..........)))))).. ( -34.37)
>DroSim_CAF1 5251 117 - 1
UAAUGGAAAAUUUUCAAAGUGUGCCCACCAAACCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGAUCGGGUGGUAAUGCUAUACACUUGAUAAGUCUGACAAUUCCUUGGCAUAGG
...((((.....))))...((((((........(((((((((((.(((((((...))))))).)))))(((((...........)))))....))))))..........)))))).. ( -29.67)
>DroEre_CAF1 6041 116 - 1
CAAUGGAAAUUUUUCAAAGUGUGCCCACCAAUCCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGACCGGGUGGUAAUGCUAUCCACUUGAUAGCUCUGACAAUACUUCGGCUUAG-
.............((.((((((..(((((..(((((((..(((.......)))......)))))))...)))))....((((((.....)))))).......)))))).)).....- ( -31.00)
>DroYak_CAF1 5289 116 - 1
CAGUGGAAAUUUUUCAAAGUGUGCCCACCAAUCCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGACCGGGUGGUAAUGCUAUCCACUUGAUAAGUCUGACAAUACUUUGGCUUAG-
.((((((..........(((((..(((((..(((((((..(((.......)))......)))))))...)))))..))))).))))))...((((((............)))))).- ( -33.30)
>consensus
CAAUGGAAAUUUUUCAAAGUGUGCCCACCAAUCCAGGCUGAUCUUGACAUGAUAAUUAUGUCUGGAUCGGGUGGUAAUGCUAUCCACUUGAUAAGUCUGACAAUUCCUUGGCAUAG_
...((((.....))))...((((((........(((((((((((.(((((((...))))))).)))))((((((.....))))))........))))))..........)))))).. (-27.59 = -28.83 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:39 2006