| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,987,286 – 11,987,380 |
| Length | 94 |
| Max. P | 0.590999 |
| Location | 11,987,286 – 11,987,380 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -22.78 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.590999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11987286 94 + 23771897 CCGGGGCAGUUUGCCAUUGCUCGCAUAGCGAUGGUGGUAAUCUGGCGACUGCGACUCCUGGCGGUGCUGCUGCAA-GAAAGUAAAU-GUAUGCCAA----- ..(((((((.(((((((((.((((...))))))))))))).)))((....))..))))(((((.(((...(((..-....)))...-)))))))).----- ( -30.80) >DroVir_CAF1 6648 94 + 1 ACGCGGCAAUUUGCCAAUGCUCGCAUAUCGUUG---AUAGUCCGGCGACUGCGACUCCUGACGAUGCUGCUGCAAUGUGAAUG----AGGAAACAUGAGCU ....(((.....)))...(((((((((((((((---..(((((((...))).))))..)))))))).))).............----.(....)..)))). ( -29.20) >DroPse_CAF1 8147 92 + 1 CCGCGGCAGUUUGCCAUUGCUCGCAUAGCGAUGG---AAGUCCGGCGACUGCGACUCCUGGCGAUGCUGCUGCAA-GUGAGAAUAGAGUGGAGCAU----- ..((((((((((((((....(((((...((.(((---....))).))..)))))....)))))).))))))))..-....................----- ( -34.50) >DroWil_CAF1 6781 89 + 1 CCGUGGCAAUUUGCCUAUGCUCGCAUAGCGAUGG---UACUCCGGUGACUGCGACUCCUGGCGAUGUUGCUGCAA-AUAGAUGAAU-GA--GUCAA----- ..(..((((((((((.....(((((...((.(((---....))).))..))))).....))))).)))))..)..-...(((....-..--)))..----- ( -27.70) >DroAna_CAF1 5757 95 + 1 CCGGGGCAAUUUUCCAUUGCUGGCAUAGCGGUGGUGGUAAUCCGGCGACUGCGACUCCUGGCGGUGCUGCUAAAA-AAAAGCCAAA-GAAAAACAUU---- ....(((......((((..(((......)))..)))).....((((.(((((........)))))))))......-....)))...-..........---- ( -27.60) >DroPer_CAF1 5113 92 + 1 CCGCGGCAGUUUGCCAUUGCUCGCAUAGCGAUGG---AAGUCCGGCGACUGCGACUCCUGGCGAUGCUGCUGCAA-GUGAGAAUAGAGUGGAGCAU----- ..((((((((((((((....(((((...((.(((---....))).))..)))))....)))))).))))))))..-....................----- ( -34.50) >consensus CCGCGGCAAUUUGCCAUUGCUCGCAUAGCGAUGG___UAGUCCGGCGACUGCGACUCCUGGCGAUGCUGCUGCAA_GUAAGUAAAG_GUGAAACAU_____ ..((((((((((((((....(((((...((.(((.......))).))..)))))....)))))).))))))))............................ (-22.78 = -23.70 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:38 2006