Locus 4103

Sequence ID 3L_DroMel_CAF1
Location 11,978,932 – 11,979,032
Length 100
Max. P 0.874986
window6383

overview

Window 3

Location 11,978,932 – 11,979,032
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 90.95
Mean single sequence MFE -17.80
Consensus MFE -16.02
Energy contribution -16.46
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.90
SVM decision value 0.89
SVM RNA-class probability 0.874986
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11978932 100 - 23771897
CGCAUAAUUAUACAUUUGAUUAUGAGACGUCUGCGUGACAGACGA----AAAGAUAGAAAGACAUCAACUUAUUUAUCACCAAUAAGCAAGUCAUAAAUAAACG
..((((((((......)))))))).((((((((.....)))))..----...(((((((((.......))).))))))............)))........... ( -19.80)
>DroSec_CAF1 7909 100 - 1
CGCAUAAUUAUACAUUUGAUUAUGAGACGUCUGCGUGACAGACAG----AAAGAUAGAAAGACAUCAACUUAUUUACUACCAAUAAGAAAGUCAUAAAUAAACG
..((((((((......)))))))).((((((((.....)))))..----...................((((((.......))))))...)))........... ( -18.00)
>DroSim_CAF1 9205 100 - 1
CGCAUAAUUAUACAUUUGAUUAUGAGACGUCUGCGUGACAGACAG----AAAGAUAGAAAGACAUCAACUUAUUUACUACCAAUAAGCAAGUCAUAAAUAAACG
..((((((((......)))))))).((((((((.....)))))..----...................((((((.......))))))...)))........... ( -17.30)
>DroEre_CAF1 6720 104 - 1
CGCAUAAUUAUACAUUUGAUUAUGAGACGUCUGCGUGACAGACAAGCCCAUAGAAAAGAAGACAUCAACUUAUCUACUACCAGUAAGCAAGUCAUGAAUAAACG
..((((((((......)))))))).((((((((.....))))).......((((.(((..(....)..))).))))..............)))........... ( -19.30)
>DroYak_CAF1 6806 104 - 1
CGCAUAAUUAUACAUUUGAUUACGAGACGUCUGCGUGACAGACGAGACCAAAGAAAAGAAGACAUCAACUUAUCUACUACCAAUAAGCAAGUCAUAAAUAAAAG
.((.((((((......))))))..((.((((((.....)))))).......(((.(((..(....)..))).))).))........))................ ( -14.60)
>consensus
CGCAUAAUUAUACAUUUGAUUAUGAGACGUCUGCGUGACAGACAA____AAAGAUAGAAAGACAUCAACUUAUUUACUACCAAUAAGCAAGUCAUAAAUAAACG
..((((((((......)))))))).((((((((.....))))).........................((((((.......))))))...)))........... (-16.02 = -16.46 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:33 2006