| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,965,565 – 11,965,685 |
| Length | 120 |
| Max. P | 0.646372 |
| Location | 11,965,565 – 11,965,685 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -44.07 |
| Consensus MFE | -29.45 |
| Energy contribution | -30.15 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11965565 120 + 23771897 CGUACUGGGAGCUGUGCUUCUCCACCUGUGGCCUGCCCUCUUGGACAGAGCAGCUGUUUCUUUUGCUAGCACCUCAUCUUCUCGAGGAGCACGAGCCACGACGUGGACGAGUACUGAAUC .(((((.(((((...)))))(((((.((((((((((((((..(((..(((..(((((.......)).)))..)))...)))..)))).))).).))))))..)))))..)))))...... ( -42.50) >DroVir_CAF1 23220 120 + 1 CCUACUGGGAGCUGUGCUUCUCCAGCUUUGGCUUGCCCUCGUGGACGGAGCAGCUGUUUCUGCUGCUAGCUCCGCACCUGCUGGAGAAGCACGAGUUGCGGCGCGGACGCAUCAUAAAUC .......(.(((((((((((((((((...((..(((((....))..((((((((.((....)).))).)))))))))).))))))))))))).)))).).(((....))).......... ( -53.80) >DroGri_CAF1 20138 120 + 1 CCUACUGGGAGCUGUGUUUCACCAGCUUUGGCUUGCCUUCGUGGACGGAGCAGCUGUUUCUACUGCUGGCUCCACAUCUGCUGGAAAAGCACGAGCUGCGUCGCGGGCGCACCAUAAAUC .....(((.((((((((((..(((((..((.....((.....))..((((((((.((....)).))).))))).))...)))))..)))))).))))((((.....)))).)))...... ( -45.60) >DroWil_CAF1 20861 120 + 1 CCUACUGGGAGUUGUGCUUUUCCAGUUUCGGUUUGCCCUCGUGGACUGAACAAUUGUUCCUGUUGCUAGCUCCACACUUGCUGGAAGAGCAUGAACCGCGUCGUGGCCGCAUUAUUAAUC ......((...(..((((((((((((...((....))...((((((((((((........))))..))).)))))....))))))))))))..).))(((.......))).......... ( -38.00) >DroMoj_CAF1 16326 120 + 1 CCUACUGGGAGCUGUGCUUCUCCAGCUUUGGCCUGCCCUCGUGGACGGAGCAGCUGUUUCUGCUGCUGGCUCCGCAUUUGCUGGAGAAAAAUGAACCGAGACGUGGACGCACAAUCAAUC ((....))((..((((((((((((((...((....))...(((((...((((((.......))))))...)))))....))))))))).......(((.....)))..))))).)).... ( -44.70) >DroAna_CAF1 18155 120 + 1 CCUACUGGGAACUGUGCUUCUCCAGCUGCGGCCUGCCCUCUUGGACGGAACAGCUUUUCCUGUUGUUGGCACCUCAUCUCCUCGAGGAGCAUGAAUCAAGACGGGGCCGGGUCUUGAAUC ....(((((((......))).))))....(((((((((((((((..((((((((.......))))))....))((((((((....)))).)))).))))))..))).))))))....... ( -39.80) >consensus CCUACUGGGAGCUGUGCUUCUCCAGCUUUGGCCUGCCCUCGUGGACGGAGCAGCUGUUUCUGCUGCUAGCUCCACAUCUGCUGGAGAAGCACGAACCGCGACGUGGACGCAUCAUAAAUC .......((..(.(((((((((((((...((....))...(((((...((((((.......))))))...)))))....))))))))))))))..))....................... (-29.45 = -30.15 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:30 2006