| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,962,756 – 11,962,860 |
| Length | 104 |
| Max. P | 0.823915 |
| Location | 11,962,756 – 11,962,860 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -29.27 |
| Consensus MFE | -18.10 |
| Energy contribution | -17.35 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11962756 104 - 23771897 UUGAAAGUAUAGGAGUCCUCGUAUUCCGUGUGAGUGCGUGGAUUCUCCAGGUUGGUCAGCUUAAUGGCCAUGCGGUGGUAGAUCUGGAAAGUAAA--UGUGGUUUA- ...(((.((((.((((((.(((((((.....))))))).))))))(((((((((((((......))))).(((....))))))))))).......--)))).))).- ( -36.60) >DroVir_CAF1 19900 102 - 1 UUAAACGUAUAUGAAUCUUCGUAUUCGGUAUGAGUGCGUGGAUUCUCCAGAUUUGUUAACUUAAUUGCCAUACGAUGAUAAAUCUACAAAGGA-A---UUGAUUUA- ............((((((.(((((((.....))))))).))))))(((((((((((((.(.............).)))))))))).....)))-.---........- ( -22.02) >DroWil_CAF1 17515 104 - 1 UUGAAUGUAUAGGAGUCUUCGUAUUCCGUAUGGGUACGAGGAUUCUCCAAAUUGGUCAGCUUUAUAGCCAUACGAUGAUAGAUCUGUAAUAGAAA--AUACGCAUC- .......(((((((((((((((((((.....)))))))))))))).....((((....(((....)))....)))).......))))).......--.........- ( -24.50) >DroYak_CAF1 14161 104 - 1 UUGAACGUAUAGGAGUCCUCGUAUUCCGUGUGCGUGCGCGGAUUCUCCAGAUUGGUCAGCUUGAUGGCCAUGCGGUGGUAGAUCUGGAAAGUCAA--AGUGUUUUA- ....((((((((((((......))))).)))))))((((.((((.(((((((((((((......))))).(((....))))))))))).))))..--.))))....- ( -37.50) >DroMoj_CAF1 12280 104 - 1 UUAAAGGUAUAUGAGUCCUCAUAUUCGGUGUGAGUGCGUGGAUUCUCCAGAUUGGUUAACUUGAUGGCCAUGCGGUGGUAGAUCUGUAAAAUAUA---UUGAAUUAG .....(((((((..(..(((((((...)))))))..)(..((((..(((...((((((......)))))).....)))..))))..)...)))))---))....... ( -24.50) >DroAna_CAF1 15515 106 - 1 UUAAAGGUGUAGGAGUCUUCGUAUUCCGUGUGGGUGCGAGGAUUUUCCAGGUUUGUCAGUUUAAUUGCCAUGCGGUGGUAUAUCUAAAAAGGAUAUCUAUGGCUUA- .....(((...(((((((((((((((.....))))))))))))..))).((....)).........)))..((.((((.((((((.....)))))))))).))...- ( -30.50) >consensus UUAAACGUAUAGGAGUCCUCGUAUUCCGUGUGAGUGCGUGGAUUCUCCAGAUUGGUCAGCUUAAUGGCCAUGCGGUGGUAGAUCUGGAAAGGAAA___UUGGUUUA_ ............((((((.(((((((.....))))))).))))))..((((((..(((.(.............).)))..))))))..................... (-18.10 = -17.35 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:29 2006