Locus 410

Sequence ID 3L_DroMel_CAF1
Location 1,195,457 – 1,195,547
Length 90
Max. P 0.997081
window601

overview

Window 1

Location 1,195,457 – 1,195,547
Length 90
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 76.39
Mean single sequence MFE -41.17
Consensus MFE -26.19
Energy contribution -27.00
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -2.60
Structure conservation index 0.64
SVM decision value 2.80
SVM RNA-class probability 0.997081
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1195457 90 + 23771897
GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAACCAGGCGCGU-----CUGGUGGG--------GGCAGGUUGGGAGCCCAGAUUUCCA
((((((((((((((((((((((....))).)))).....((((...((((((....)-----)))))..)--------)))..)))))))))))....)))). ( -46.40)
>DroSec_CAF1 12216 89 + 1
GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAAGCAGGCGCCU-----CUGGUGGG--------GGCAGGUUGGG-GCCCAGAUUUCCA
((((((((((((((........))))))))).))..(((((((...(((..((.(((-----(....)))--------)))..))).))-)))))....))). ( -39.70)
>DroEre_CAF1 9942 84 + 1
GGAGGGGCUCCUAGCGGUACUCCUUGG-GCUAGCAGUGGGCCUAAAACCAAAGGCCAGA--------------AGGCGCGGAGGUUGGGAGCCCAGAUU----
....(((((((((((....((((((((-(((.......)))))))........(((...--------------.)))..))))))))))))))).....---- ( -39.00)
>DroYak_CAF1 11719 103 + 1
GGAGGGGCUCUUAGCGGUACUCCUUGGGGUUACCAGUGGGCCUACAACCAGACGCCAAAUGCCAAGUGAGGGGAGAUGGGGAGGUUGGGAGCCCAGAUUUCCA
((((((((((((((((((((((....))).))))..(((........)))..(.(((..(.((.......)).)..))).)..)))))))))))....)))). ( -39.60)
>consensus
GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAACCAGACGCCA_____CUGGUGGG________GGCAGGUUGGGAGCCCAGAUUUCCA
....((((((((((((((((((....))).))))....(((............)))...........................)))))))))))......... (-26.19 = -27.00 +   0.81) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:11 2006