Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,195,457 – 1,195,547 |
Length | 90 |
Max. P | 0.997081 |
Location | 1,195,457 – 1,195,547 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.39 |
Mean single sequence MFE | -41.17 |
Consensus MFE | -26.19 |
Energy contribution | -27.00 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.05 |
Mean z-score | -2.60 |
Structure conservation index | 0.64 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1195457 90 + 23771897 GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAACCAGGCGCGU-----CUGGUGGG--------GGCAGGUUGGGAGCCCAGAUUUCCA ((((((((((((((((((((((....))).)))).....((((...((((((....)-----)))))..)--------)))..)))))))))))....)))). ( -46.40) >DroSec_CAF1 12216 89 + 1 GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAAGCAGGCGCCU-----CUGGUGGG--------GGCAGGUUGGG-GCCCAGAUUUCCA ((((((((((((((........))))))))).))..(((((((...(((..((.(((-----(....)))--------)))..))).))-)))))....))). ( -39.70) >DroEre_CAF1 9942 84 + 1 GGAGGGGCUCCUAGCGGUACUCCUUGG-GCUAGCAGUGGGCCUAAAACCAAAGGCCAGA--------------AGGCGCGGAGGUUGGGAGCCCAGAUU---- ....(((((((((((....((((((((-(((.......)))))))........(((...--------------.)))..))))))))))))))).....---- ( -39.00) >DroYak_CAF1 11719 103 + 1 GGAGGGGCUCUUAGCGGUACUCCUUGGGGUUACCAGUGGGCCUACAACCAGACGCCAAAUGCCAAGUGAGGGGAGAUGGGGAGGUUGGGAGCCCAGAUUUCCA ((((((((((((((((((((((....))).))))..(((........)))..(.(((..(.((.......)).)..))).)..)))))))))))....)))). ( -39.60) >consensus GGAGGGGCUCUUAGCGGUACUCCUGGGGGUUACCAGUGGGCCUAAAACCAGACGCCA_____CUGGUGGG________GGCAGGUUGGGAGCCCAGAUUUCCA ....((((((((((((((((((....))).))))....(((............)))...........................)))))))))))......... (-26.19 = -27.00 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:11 2006