Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 171,752 – 171,872 |
Length | 120 |
Max. P | 0.936132 |
Location | 171,752 – 171,872 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.06 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -26.55 |
Energy contribution | -27.55 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.95 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 171752 120 + 23771897 GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG ...............((((((..(((((((((((((.....)))))))).............(((((((((........)))))))))...)))))....)))))).............. ( -27.60) >DroSec_CAF1 5458 120 + 1 GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAUAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUAGAGACAG .................(((((((.((.((((((((.....))))))))..........(((.((((.(((........)))...(((....)))..))))....))).)).))))))). ( -27.30) >DroSim_CAF1 5636 120 + 1 GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAUAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUAGAGACAG .................(((((((.((.((((((((.....))))))))..........(((.((((.(((........)))...(((....)))..))))....))).)).))))))). ( -27.30) >DroYak_CAF1 5667 120 + 1 GUACAAUUUAUAUUUUUUGUUUAUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUUUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG ...............((((((.((((((((((((((.....)))))))).............(((((((((........)))))))))...))))))...)))))).............. ( -29.70) >consensus GUACAAUUUAUAUUUUUUGUUUCUCGCAUAAUGUGCUAUAUGCAUAUUAAUAUUAUAUAGGUGUGUAGAGAUAAUAUCUUCUUUACGCUGAUGCGAUUACAACAAACCAGUUACAGACAG .................(((((((((((((((((((.....)))))))).............(((((((((........)))))))))...)))))....(((......))).)))))). (-26.55 = -27.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:32 2006